Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1000 ATGGATGATGCACAGGGTAGTTCAAATTCTCTGCCCCCTTTCCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACGGATTCGGTTGTTTCGTGGAGTGTCACTAGCAAGAGTTTCATTGTATGGAATCCCCCAGAATTTGCCAGGGATTTGCTGCCTAGATTCTTTAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTGAACACATATGGATTTAAAAAAGTTGACCCAGAACAATGGGAATTTGCCAATGATGACTTTGTCAGAGGGCAACCTCATCTTATGAAGAACATCCATAGACGGAAGCCTGTTCATAGCCATTCTTTGCAGAATCTCCAAGCACAAGGCCCACTAGGGGAATCAGAAAGGCAGAGTTTTACTGATGAAATAGAGAAGCTTAAGCATGATAAAGAGCAACTTCTCGTGGAATTACAGAAATACCAGCATGAGTGGCAGGCATATGAGATACAAATACATTGCTCAAAAGATCGGTTGGAAAAGTTGGAACAGAATCAACAAAGGATGGTTTCTTCTGTTTCTCATGTATTGCAGAAACCTGTGATTTCTGTAAATATCTTGCCTCTGACAGAAACCCTGGATAGAAAACGAAGGTTGCCAAGAAGTGGCCACTTTTATGATGAAGATGGCGTTGAAGATGCCATTGAAACTTGCCAAATGTTACCAAGAGAAAATGCAGACCATACCACTGTCTTGACATTAAATGTGGAGCGACTGGATCAGCTTGAATCATCCATGGCGTTTTGGGAGGCTATTGTACATGATATTGGTGACACCTTCGTTCAAATTCAGTCAAGTATGGATTTGGATGAATCTACAAGTTGTGCTGATAGTCCATCTTTATCTTGTGCGCAATTAGATGTTGAAGTTCGGCATAAGTCACCGGGAATTGACATGAACTCTGAGCCAACTACAGCTGCTGTTCCTGAGCCTGTTGCATCAAAAGAACAACCTGCGGGAACCACTGTTGCAGCAACTGGTGTTAATGATGTATTCTGGGAGCAGTTCTTGACAGAGGATCCTGGTGCATCAGAAACACGGGAAGTGCAGTCAGAAAGAAAGGATTATGAAGGCAGAAAGAATGAAGGAAAACCCAGCGACCTTAACAAATTTTGGTGGAACAAACGGAATGCAAATAATCTTCCAGAACAGATGGGGCATGTTGGTCAAGCAGAGAAAACTTAG 1209 0.4268 MDDAQGSSNSLPPFLAKTYEMVDDPSTDSVVSWSVTSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFKKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQGPLGESERQSFTDEIEKLKHDKEQLLVELQKYQHEWQAYEIQIHCSKDRLEKLEQNQQRMVSSVSHVLQKPVISVNILPLTETLDRKRRLPRSGHFYDEDGVEDAIETCQMLPRENADHTTVLTLNVERLDQLESSMAFWEAIVHDIGDTFVQIQSSMDLDESTSCADSPSLSCAQLDVEVRHKSPGIDMNSEPTTAAVPEPVASKEQPAGTTVAATGVNDVFWEQFLTEDPGASETREVQSERKDYEGRKNEGKPSDLNKFWWNKRNANNLPEQMGHVGQAEKT* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1000 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 383 IPR027725 -
Gso8g1000 402 Coils Coil 125 173 - -
Gso8g1000 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g1000 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g1000 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g1000 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g1000 402 MobiDBLite consensus disorder prediction 353 374 - -
Gso8g1000 402 Gene3D - 6 104 IPR036388 -
Gso8g1000 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g1000 402 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 383 - -
Gso8g1000 402 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Gso8g1000 402 MobiDBLite consensus disorder prediction 303 326 - -
Gso8g1000 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g1000 402 MobiDBLite consensus disorder prediction 345 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1000 Gso-Chr8 9260817 9263042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1000 7 402 HSF AT4G18880 54.054 5.05e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso8g1000 HSF_DNA-bind 2.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1000 K09419 - gmx:100817602 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1379 5 37261899 37264223 Gso8g1000 8 9260817 9263042 GST
Gso8g1000 8 9260817 9263042 Gso15g0734 15 6633235 6635295 PCT
Gso8g1000 8 9260817 9263042 Gso11g2537 11 41426326 41428467 PCT
Gso15g0734 15 6633235 6635295 Gso8g1000 8 9260817 9263042 PCT
Gso11g2537 11 41426326 41428467 Gso8g1000 8 9260817 9263042 PCT