Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0981 ATGTGTTATGTATTGTCAGGAGTTTCTTTTCCAAATTTCTTTTCAGGTTTTGAAATATTGATTGGAAGAATTTATATAGGGATTATGGACCAAGCAATAAGCAAAGGCAGTGGTGAGATTTTGAATCATGTTGATGAAAGGGTGGATGAGGATTTGAACCAATTGGTTGAAGGAAAAGCAATTGATGCAGGAGCTGGACATAGCTTGGGTGAAGGAGTTAGTGTAAGTGGAGAAGATGGGACTTCAGAAGAGATGTGCAATGATCTTAGATTGAAGAAAGAGCTAAAGGAGGGACCTCAAGAAGTTAATGATCAGAACATGGGTGACCCACAAGAAATTAATGATACATTGCATGGGGTTGATCAAGGAACTAGTTATAGTTCAAGAGATTTGGTTAGTGGGGAAGTACCTGAGACTTGTGTTGTAATAGATCCTTTTACTCAGATTGAGTGTGTCAATGGAGATAATAGGAAATTGGAAGCAAAACCTAAGGAATCAGGGTTGAACAAGGTGTCCATGAAAGTGACAAAAGGGGTGTCTGAGACTGATAAAAATTCATGTGTGATTGATATAAACCGTGGCAGCTGTGATGGCTTTAGCGAGAATTTGGAAGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACGATTGGAAGCAGCAGATGTTGGCACTGCAAGTAGTGCTACTACTAATACAGATTTGATTCAGCTCGGTTGTGCATGTAAAGATGAGCTAGGGATTGTGCATAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGATGTTACGGATAATGGATTTATTGAAGAGTGGAATGATACTAGATTCATGGACAGTGATAATACCTCATCCAGAAGGTTTGGTGGATGCTTGTGCGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTAATAGCTTTTGTTCTGCCATGGTTCTTCCGTGTAAATATGTTCTAG 1017 0.3992 MCYVLSGVSFPNFFSGFEILIGRIYIGIMDQAISKGSGEILNHVDERVDEDLNQLVEGKAIDAGAGHSLGEGVSVSGEDGTSEEMCNDLRLKKELKEGPQEVNDQNMGDPQEINDTLHGVDQGTSYSSRDLVSGEVPETCVVIDPFTQIECVNGDNRKLEAKPKESGLNKVSMKVTKGVSETDKNSCVIDINRGSCDGFSENLEGEMICRICHLASGQRLEAADVGTASSATTNTDLIQLGCACKDELGIVHSHCAEAWFKLKGNRLCEICGETAKNVSDVTDNGFIEEWNDTRFMDSDNTSSRRFGGCLCGQPFCNFLMACLVIAFVLPWFFRVNMF* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0981 338 Pfam RING-variant domain 209 271 IPR011016 GO:0008270
Gso8g0981 338 ProSiteProfiles Zinc finger RING-CH-type profile. 201 278 IPR011016 GO:0008270
Gso8g0981 338 PANTHER ZINC FINGER, RING-CH-TYPE 29 338 - -
Gso8g0981 338 MobiDBLite consensus disorder prediction 104 130 - -
Gso8g0981 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 283 IPR013083 -
Gso8g0981 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 29 338 - -
Gso8g0981 338 SMART ringv_2 208 272 IPR011016 GO:0008270
Gso8g0981 338 SUPERFAMILY RING/U-box 206 274 - -
Gso8g0981 338 MobiDBLite consensus disorder prediction 100 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0981 Gso-Chr8 9061808 9065921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0981 189 337 C3H Transcription Factor Family AT5G05830 36.538 2.53e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0981 - - gmx:100791129 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1358 5 37063171 37066408 Gso8g0981 8 9061808 9065921 GST
Gso8g0981 8 9061808 9065921 Gso15g0720 15 6491928 6495608 PCT
Gso8g0981 8 9061808 9065921 Gso11g2556 11 41619730 41623464 PCT
Gso15g0720 15 6491928 6495608 Gso8g0981 8 9061808 9065921 PCT
Gso11g2556 11 41619730 41623464 Gso8g0981 8 9061808 9065921 PCT