Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0980 ATGTCAGATCACAACCACGAGATATCCACTTCCGCTGATGATGGTAATGATTCTCTGAATGGTCACATCATATCTACTACAGTTGGAGGAAAAAATGGGAAGCCCAAACAGACTAAAAGTTATATAGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACAGGACAAAAGATATAAAAATCGTGAGCTACAGTTAATGCGCTTGATGGACCATCCAAATGTGATCTCTCTGAAGCATCGTTTCTTTTCCACTACAAGTGCAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCTATGTATCGAGTCTCAAAGTTCTATAGTAATACTAATCAGAGCATGCCACTTATCTATGTAAAACTTTACATGCACCAGATTTTCAGTGGGCTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGACCCTCTTACACACCAGGTTAAGATATGTGATTTTGGGAGTGCAAAAGTGCTGGTCAAAGGAAAAGCTAATATATCACACATATGTTCACTTTTCTATCGGGCACCGGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTGCTTTTGGGCCAGCCCTTATTTCCTGGCGAAAATGCAGTGGACCAGCTTGTAGAGATTATCAAGGTTCTTGGCACACCCGCTCAGGAGGAAGTTTCCTGTACGAATCCAAACTACAATGATTTCAAGTTTCCACAGATATTCCATGAAAAAATGCCTCCAGAAGCAATAGATCTTGCTTCCCGGCTTCTGCAGTATTCCCCAAGTCTTCGATGTACTGCGCTAGAAGCATGTGCTCACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCACTTGCCAGATGGTCGTCCATTTCCCCCTCTATTCAACTTAAAACAAGAGTTATCTGGAGCATCTCCAGAACTTATTGATAAGTTGATTCCTGACCATGTGAAGCGGCAGATAGGGCTACAACATGCCCATTTGGCTGGATTTCTGGAACATGATGTTAAGCTCGGCAAATTGTAG 1152 0.4262 MSDHNHEISTSADDGNDSLNGHIISTTVGGKNGKPKQTKSYIAERIVGTGSFGIVFLAKCLETGEPVAIKKVLQDKRYKNRELQLMRLMDHPNVISLKHRFFSTTSADELFLNLVMEYVPESMYRVSKFYSNTNQSMPLIYVKLYMHQIFSGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGKANISHICSLFYRAPELMFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPAQEEVSCTNPNYNDFKFPQIFHEKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNAHLPDGRPFPPLFNLKQELSGASPELIDKLIPDHVKRQIGLQHAHLAGFLEHDVKLGKL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0980 383 Gene3D Transferase(Phosphotransferase) domain 1 121 360 - -
Gso8g0980 383 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
Gso8g0980 383 CDD STKc_GSK3 36 320 IPR039192 -
Gso8g0980 383 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA 4 367 - -
Gso8g0980 383 Pfam Protein kinase domain 43 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0980 383 Gene3D Phosphorylase Kinase; domain 1 26 120 - -
Gso8g0980 383 SMART serkin_6 41 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0980 383 ProSiteProfiles Protein kinase domain profile. 41 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0980 383 MobiDBLite consensus disorder prediction 1 36 - -
Gso8g0980 383 SUPERFAMILY Protein kinase-like (PK-like) 36 341 IPR011009 -
Gso8g0980 383 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 4 367 - -
Gso8g0980 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Gso8g0980 383 MobiDBLite consensus disorder prediction 12 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0980 Gso-Chr8 9051102 9055612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0980 47 325 Core Cell Cycle Gene Families AT1G76540 34.014 3.17e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso8g0980 Pkinase 2.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0980 K14502 - gmx:100812801 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1357 5 37051018 37055329 Gso8g0980 8 9051102 9055612 GST
Gso8g0980 8 9051102 9055612 Gso11g2558 11 41636509 41640871 PCT
Gso15g0719 15 6474381 6478832 Gso8g0980 8 9051102 9055612 PCT