Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0978 ATGAAGCCCTTCTGCAGATTCTTGATTCTTGTATCGCTATTTTCTCTGGTGGAATCTTCATGCAACAGCAGTGAAGAGCATGACTTGGTGTCCAAGGCTTTCAAATCAGTCTCTGGCTTCAACGCTTTCTCCTCCTCGTTCCCAACCAACAACTGTTCACAAACTCACATCATCACCAGCATAGTACTTCCATCCCAAAACCTCAGCGGCACAATTTCATGGAACTACCTTAGGAACATATCCAACTTGCAGATTCTCGATCTCTCCGGGAATTTCCTACAGGGCCACGTGCCAAGCTGGTTTTGGTCGAGTTCATCCTTATTGGCAATAAACCTCTCTAGAAATAGGTTCGGAGGGAGCATCCTTCAACCCACATCAGAAAACACCTCGTTTTCATCCATTCAATCCCTCAACCTCTCATACAATAGGTTTACCAACTCAATCCAGCTTTCTGGTTTCAAAAACCTTAAAATCCTCGACCTTTCACACAACAACCTCGTAACACTCCCTTCCGGGTTTCAAAACCTCAGCAACCTACAACACATCGACCTCTCAAGCTGCAATCTTCAAAGCAACGTAAAACCCATTTCCGCTCTTCACTCACTTCACTACTTGGACTTATCAAACAACACCTTCACGGGTAATTTCCCTTATGATTTCCCTCCACTCACCACCCTCAAGTTCCTCAACATCTCGTTCAACAACTTCACCTCAGCAATTAGCGTAAACAAGTTCAGTAGATTCTTCGGTAAATCAGCTTTCGTCCACGCTGGCAGCAACTTCACCTACACCAACGACAGTAATAAAAACACAAAACAAGAAGCCATCATCGAAAAGAAACAAAAGAAGCGAAAGTCCAAAACGCTGATTGGTGCAGCGTCGTCTGCGGCATCAGCAATTGTCCTAATTCTCTTGGGCATATGGGCAGTCCGCATTGTGATTCAGAAGAGGAAGCAACGTGCCAAGAAGAACAAGTGGGCGATTTCGATGCCGGTCCCACAAGGGATGATGATGATGATGAAATCAGGGCCGTTCGAGTTCGAGACAGAATCGGGGTCAACGTGGGTGGCTGACCTGAAGGAAGCGTCTTCGGCGGCGGTGGTGATGTTCGAGAAGCCGTTGATGAATCTGAGCTTCAAGGACCTCATTGTTGCAACGTCACACTTCGGGAAGGAGTCGCTTCTAGCGGAGGGAAGGTGTGGGCCAGTGTATAGGGCAGTGCTACCCGGGGACCTCCACGTGGCAATCAAGGTCCTGGAAGAGGCCAGAGACGTTGATCCTGATGACTCCGTGGCCACCTTCGTTGACCTCTCGAGACTCAAGCATCCCAACCTGCTGCCCCTCTCCGGTTACTGCATTGCAGGTAAGGAGAAACTGGTGCTGTACGAGTACATGGCAAACGGCGACCTAGGAAGGTGGCTACACGAGCTTCCGACTGGAGACACCAACGTGGAGGACTGGACAGGCGACACGTGGGAGATTCAAAACGGCGTCGTCGACGACGGATCCCCAGAAAAGATGGGATGGCTCACACGACACCGTATCGCGGTGGGCATAGCGCGTGGCCTCGCGTACCTTCACCACGCGCGTTCCAAGCCCGTGGTGCACGGCCACCTCGTCACCTCCAACATCCTCCTCGCCGACGACTTCGAGCCCCGCATCGCCGATTTCGGGTTGCGACCCGACCCGGATCCGAATTTCGGCACGGAGACCGACGTCTACTGCTTCGGGGTGGCTCTGGTGGAGCTCCTGACGGGGAAGGGGAGCACGGCGGAGGCGGTGGCAGCGACACGGAAGGCGGTGAGGGAGGGGCACGGCGTTAGGGTTTTGGACGAGAGGCTCCGACTCGGGGGTGACTCGGTGGTACTGAGTCAGATGGTGGAGACTCTCCGAGTCGCGTTTTTGTGTACTGCTGAATGCCCTTCGAAGAGGCCCACAATGCAACAGGTTTTGGGTTTGCTCAAAGACATTCGTCCTCATCACCAACACCAACACCAACTCGTCCTGAGTTGA 2013 0.5226 MKPFCRFLILVSLFSLVESSCNSSEEHDLVSKAFKSVSGFNAFSSSFPTNNCSQTHIITSIVLPSQNLSGTISWNYLRNISNLQILDLSGNFLQGHVPSWFWSSSSLLAINLSRNRFGGSILQPTSENTSFSSIQSLNLSYNRFTNSIQLSGFKNLKILDLSHNNLVTLPSGFQNLSNLQHIDLSSCNLQSNVKPISALHSLHYLDLSNNTFTGNFPYDFPPLTTLKFLNISFNNFTSAISVNKFSRFFGKSAFVHAGSNFTYTNDSNKNTKQEAIIEKKQKKRKSKTLIGAASSAASAIVLILLGIWAVRIVIQKRKQRAKKNKWAISMPVPQGMMMMMKSGPFEFETESGSTWVADLKEASSAAVVMFEKPLMNLSFKDLIVATSHFGKESLLAEGRCGPVYRAVLPGDLHVAIKVLEEARDVDPDDSVATFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDTNVEDWTGDTWEIQNGVVDDGSPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHLVTSNILLADDFEPRIADFGLRPDPDPNFGTETDVYCFGVALVELLTGKGSTAEAVAATRKAVREGHGVRVLDERLRLGGDSVVLSQMVETLRVAFLCTAECPSKRPTMQQVLGLLKDIRPHHQHQHQLVLS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0978 670 Gene3D Ribonuclease Inhibitor 21 127 IPR032675 -
Gso8g0978 670 SUPERFAMILY Protein kinase-like (PK-like) 379 661 IPR011009 -
Gso8g0978 670 Gene3D Ribonuclease Inhibitor 128 253 IPR032675 -
Gso8g0978 670 ProSiteProfiles Protein kinase domain profile. 389 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0978 670 PANTHER KINASE, PUTATIVE-RELATED 3 662 - -
Gso8g0978 670 Gene3D Transferase(Phosphotransferase) domain 1 465 564 - -
Gso8g0978 670 SUPERFAMILY L domain-like 46 240 - -
Gso8g0978 670 Gene3D Transferase(Phosphotransferase) domain 1 565 668 - -
Gso8g0978 670 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 662 - -
Gso8g0978 670 Pfam Leucine rich repeat 133 189 IPR001611 GO:0005515
Gso8g0978 670 Gene3D Phosphorylase Kinase; domain 1 349 464 - -
Gso8g0978 670 Pfam Protein tyrosine and serine/threonine kinase 393 560 IPR001245 GO:0004672|GO:0006468
Gso8g0978 670 ProSiteProfiles Leucine-rich repeat profile. 155 177 IPR001611 GO:0005515
Gso8g0978 670 Pfam Leucine Rich Repeat 82 101 IPR001611 GO:0005515
Gso8g0978 670 SMART LRR_typ_2 80 103 IPR003591 -
Gso8g0978 670 SMART LRR_typ_2 153 175 IPR003591 -
Gso8g0978 670 SMART LRR_typ_2 199 222 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0978 Gso-Chr8 9030850 9036130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0978 40 657 Receptor kinase-like Gene Family AT5G07280 31.118 4.06e-72 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Gso8g0978 PK_Tyr_Ser-Thr 9.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0978 - - gmx:100788556 1301.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1356 5 37043251 37046498 Gso8g0978 8 9030850 9036130 GST
Gso8g0978 8 9030850 9036130 Gso15g0717 15 6455733 6458909 PCT
Gso8g0978 8 9030850 9036130 Gso11g2560 11 41653213 41656389 PCT
Gso15g0717 15 6455733 6458909 Gso8g0978 8 9030850 9036130 PCT
Gso11g2560 11 41653213 41656389 Gso8g0978 8 9030850 9036130 PCT