Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0960 ATGGAGTATCAAAACCAAAATGCCAAGGAAGGTAGATTCTGTGAGAAACTCAAGATCAAGAGCATGCCTAAGTTTGTAGGAGTGAGACAAAGGGCATCAGGGAAATGGGCAGCAGAGATCAAAGACACATCAAAGAAGATTAGGCTGTGGCTTGGAACTTACCAAACTGCTGAGGAAGCAGCTCGAGCTTATGATGAAGCTGCGTGCCTCCTTAGAGGTTCAAACACTCGCACCAATTTCTCTACTCATAAATATGGCATTGCTACAAATTCTCCTATATCTCTCAAACTCAGAAACCTCCTTGATCGTAAAGCCATGTCAAATCAAAGTCAAATTCAAATTCAACGCCAATCATCCTCTACGATAAGTTCCACTTTCGAAGGTGCTGCTGCTACTTCAGCTAGTCCAAATGTTAGTGCCATCAATAAGATCATGGTCATGGAAAACTACTCTACTTGTAGTAGTGAAGGTAATTCTATGTTTTTGGTTCAGAATCACCAAGTCTCTGATAACACGTATGGACTAGACACGAATTTGATCAACTGTTCAATGGGTATCACACCAAATACATCGCAATTTGATTGCTCTAGGGCACTAGCCCAACAAAGGATTAACGAATTACCAATGCCAAAAGATGGTTTGAATGTTGAAAGGCAATTTTCAGATTCGGTATATGCCACCAATGAGTGCCATGTGGAGGATACATTTGAATATAAGTATGAATATGATTTCAATTATCCTCTCTCACACTTTTTCTGCTTCACCTGA 768 0.4023 MEYQNQNAKEGRFCEKLKIKSMPKFVGVRQRASGKWAAEIKDTSKKIRLWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTHKYGIATNSPISLKLRNLLDRKAMSNQSQIQIQRQSSSTISSTFEGAAATSASPNVSAINKIMVMENYSTCSSEGNSMFLVQNHQVSDNTYGLDTNLINCSMGITPNTSQFDCSRALAQQRINELPMPKDGLNVERQFSDSVYATNECHVEDTFEYKYEYDFNYPLSHFFCFT* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0960 255 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Gso8g0960 255 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Gso8g0960 255 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Gso8g0960 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 18 123 - -
Gso8g0960 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 142 239 - -
Gso8g0960 255 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Gso8g0960 255 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Gso8g0960 255 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Gso8g0960 255 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Gso8g0960 255 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 142 239 - -
Gso8g0960 255 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 123 - -
Gso8g0960 255 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0960 Gso-Chr8 8827623 8828418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0960 24 101 AP2-EREBP Transcription Factor Family AT5G19790 76.923 8.05e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g0960 AP2 4.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0960 K09286 - gmx:100809046 484.952