Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0933 ATGGCAGGCGTTTCTCTCAAGTGCGGTGACTGCGGTGCTCTGCTGAGAACCGTAGAAGAAGCGCAAGAGCACGCTGAACTCACCTCCCACTCCAACTTCTCCGAATCCACCGAACCGGTTCTCAACCTCATCTGCACCGCTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCACACGAAAAGAACCGGCCATACCGAGTTCGTTGACAAGACTTCCGAGGCCGTTAAACCGATTAGTTTGGAGGCTCCGAAGGTGGATGCAACTGCTTCATCGGAAAACCCTTCCGCTGCTGCATCCACTGACCAAAATGAAGAAATGGTTGTTCCTGAAGTGGACAAAAAGCTGCTTGAGGAACTTGAATCCATGGGGTTTTCAACGGCACGGGCAACGCGGGCGCTTCATTACTCTGGTAATGCTGGCCTTGAGTCTGCCGTAAATTGGATAGTAGAGCATGAGAATGATCCTGACATAGATCAGATGCCCTTGGTACCTACCAACACCAAAATTGAGGCTCCTAAACCTTCGCTTACCCCAGAAGAATTGAAGGCCAAACAGCAGGAACTAAGGGAGAGAGCTCGTAAGAAGAAAGAAGAGGAAGAGAAGAGAATGGAGAGGGAAAGAGAAAAGGAGAGAATTCGCATTGGCAAGGAGTTGCTGGAAGCAAAGAGGATTGAAGCTGACAATGAGAGGAAACGGTTGTTGGCCTTGAGAAAAGCAGAGAAAGAGGAAGAGAAAAGTGCTAGGGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCGGAAAGAAGGCGGAGACTTGGATTGCCTCCAGAGGAACCCTCAGCAGCCAAACCTTCACCTGCACCTGTTGTGGAGGAGAAAAAGAGTTTTGTGCCTGTTAGGCCTGCCACAAAAGCCGAGCAAATGAGAGAGTGCCTCCGTTCTCTCAAGCAGAACCACAAGGAGGATGACGCCAGAGTGAAGAGAGCATTCCAAACTCTTCTAACTTATGTAGGGAATGTTGCCAGAAATCCCGATGAGGAAAAGTTCAGGAAGATACGTCTTAGTAACCAATCTTTTCAGGACAGAGTTGGTTCCTTGAGAGGGGGAATTGAATTTCTAGAAAATTGTGGGTTTGAGAAGATCGATGGCGGCGAGTTTTTATTTTTGCCTAGGGACAAAATTGAGATGGCCGTCCTGAATTCAGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCCTTCTTTGGAGTTCTTTAG 1248 0.4808 MAGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSESTEPVLNLICTACSKPCRSKTESDLHTKRTGHTEFVDKTSEAVKPISLEAPKVDATASSENPSAAASTDQNEEMVVPEVDKKLLEELESMGFSTARATRALHYSGNAGLESAVNWIVEHENDPDIDQMPLVPTNTKIEAPKPSLTPEELKAKQQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEADNERKRLLALRKAEKEEEKSAREKIKQKLEEDKAERRRRLGLPPEEPSAAKPSPAPVVEEKKSFVPVRPATKAEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNQSFQDRVGSLRGGIEFLENCGFEKIDGGEFLFLPRDKIEMAVLNSAGSELDSAIKNPFFGVL* 416
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0933 415 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 113 154 IPR015940 -
Gso8g0933 415 Gene3D - 307 405 - -
Gso8g0933 415 CDD UBA_PUB_plant 113 161 - -
Gso8g0933 415 SMART PGNneu 325 388 - -
Gso8g0933 415 Pfam PUB domain 322 392 IPR018997 -
Gso8g0933 415 MobiDBLite consensus disorder prediction 242 273 - -
Gso8g0933 415 MobiDBLite consensus disorder prediction 83 109 - -
Gso8g0933 415 MobiDBLite consensus disorder prediction 242 300 - -
Gso8g0933 415 Pfam UBA/TS-N domain 119 151 IPR015940 -
Gso8g0933 415 Coils Coil 219 264 - -
Gso8g0933 415 CDD PUB_UBA_plant 309 415 - -
Gso8g0933 415 PANTHER F13M7.16 PROTEIN 1 415 - -
Gso8g0933 415 Gene3D - 115 161 - -
Gso8g0933 415 SUPERFAMILY UBA-like 101 168 IPR009060 GO:0005515
Gso8g0933 415 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Gso8g0933 415 SUPERFAMILY PUG domain-like 296 411 IPR036339 -
Gso8g0933 415 Coils Coil 184 216 - -
Gso8g0933 415 SMART uba_6 115 153 IPR015940 -
Gso8g0933 415 MobiDBLite consensus disorder prediction 172 212 - -
Gso8g0933 415 MobiDBLite consensus disorder prediction 178 212 - -
Gso8g0933 415 PANTHER F13M7.16 PROTEIN 1 415 - -
Gso8g0933 415 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso8g0933 Gso-Chr8 8638305 8644782 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0933 98 415 C2H2 Transcription Factor Family AT1G04850 79.062 2.52e-153 435
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0933 K24348 - gmx:100794687 721.079