LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso8g0905	ATGGACGGTGCGCCACAATCCGCCGGTGGTCCGGCGCCGTTCCTTCTCAAGACCTACGAGATGGTGGACGATGCCTCCACCAACGACATCGTTTCTTGGAGCTCCACCAACAACAGCTTCGTCGTGTGGAACCCTCCCGAGTTCGCTCGCCTCCTTCTCCCGACCTATTTCAAGCACAACAACTTTTCCAGCTTCATCCGCCAGCTCAATACCTACGGATTTAGAAAAATACATCCAGAGCGATGGGAATTTGCTAATGATGAGTTTCTGAAAGATCAGAAGCATCTTCTCAAGAATATACATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCAGGTTCTCTTGTAGATCCAGAAAGGGCAGCATTTGAGGAAGAAATAGACAAACTTTCCCGTGAGAAAAATTCTCTTGAATCCAATATTCGTAACTTCAAACAACATCAGTCAACAGCAAAGCCTAAGCTAGAAGATTTTCTGCAGCGATTAGATGGTGTTGACAAGAGGCAGAAACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTACTTTCGTTGAACATCTTTCACGCAAAATTGAGTCCATGGATTTATCTGCATATAAGAAAAGGAGATTGCCTCAGGTTGATCACGTGCAACCAGTTGCCGAAAGTAGCTTGGTGGACAATCATAGCAATTTTAGAATGGAATTTGGAAATGTTTTCCGTCAAGATTTTTCGAATAAACTCAGACTGGAGTTGTCACCTGCTGTTTCAGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAGCTCACAGAAAAAGCTGTCTGAAGTAGAACCAAGAGGAGTGCAGACAAGAACAGCTCTTACATTTGCACCTGAAACATTAGAGCTTGCAGATACTGGGGCTTCTTTTACTTTTAAGATGGATTCATGTTTATCACGAAGAGCAACAACTGCTGAGAGCTCAAAACTGATCTCTTTGGAGCCAAGTAGTGAAGAAGGCGATAGTTTATCCTGCCAACTAAACTTAACTCTGGCATCTTGTCCATTGCAAGTGAACAGAAATTCATACTCAGCCAGATCACCCCAAATTGACTGTCAAGAAATTGGAAAATTGGCAGAATCAAGATTTTTTGCCAATGGTAAAGAATCTGATAGTGGTGTTTCCTCAAACCTAAATGTAGCTGCTGAGGCTACCAATTTAGCTTCATCACAGGAGGCTCCAAGTAACAACCAAGTTAACCCAGCTCCTCCAGACAGGGTGAATGATGTTTTCTGGGAACAGTTTCTTACTGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATATCCAACTACAGAGCAAACCCATATGATGAACAAGACGAAGGACGGTCAACTCATGGAATCTCTAGAAACATTAAGAACATGGATCAACTCACACTTTGA	1434	0.431	MDGAPQSAGGPAPFLLKTYEMVDDASTNDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDEFLKDQKHLLKNIHRRKPIHSHSHPPGSLVDPERAAFEEEIDKLSREKNSLESNIRNFKQHQSTAKPKLEDFLQRLDGVDKRQKQLLNFFEKALQNPTFVEHLSRKIESMDLSAYKKRRLPQVDHVQPVAESSLVDNHSNFRMEFGNVFRQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESSQKKLSEVEPRGVQTRTALTFAPETLELADTGASFTFKMDSCLSRRATTAESSKLISLEPSSEEGDSLSCQLNLTLASCPLQVNRNSYSARSPQIDCQEIGKLAESRFFANGKESDSGVSSNLNVAAEATNLASSQEAPSNNQVNPAPPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSTHGISRNIKNMDQLTL*	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso8g0905	477	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-5	7	473	-	-
	Gso8g0905	477	PRINTS	Heat shock factor (HSF) domain signature	14	37	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso8g0905	477	PRINTS	Heat shock factor (HSF) domain signature	52	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso8g0905	477	PRINTS	Heat shock factor (HSF) domain signature	65	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso8g0905	477	SUPERFAMILY	"Winged helix" DNA-binding domain	10	103	IPR036390	-
	Gso8g0905	477	Coils	Coil	121	148	-	-
	Gso8g0905	477	MobiDBLite	consensus disorder prediction	257	283	-	-
	Gso8g0905	477	Pfam	HSF-type DNA-binding	14	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso8g0905	477	SMART	hsfneu3	10	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso8g0905	477	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	7	473	IPR027725	-
	Gso8g0905	477	MobiDBLite	consensus disorder prediction	452	477	-	-
	Gso8g0905	477	ProSitePatterns	HSF-type DNA-binding domain signature.	53	77	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso8g0905	477	Gene3D	-	8	104	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso8g0905	Gso-Chr8	8382457	8387337	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso8g0905	14	477	HSF	AT4G13980	55.414	7.06e-168	479

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gso8g0905		HSF_DNA-bind	3.3e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso8g0905	K09419		-	gmx:100786408	956.822