Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0899 ATGTCTCTCCCCAAAACCCTACTTTCTCTCTTCCTTCTCCTCACGATCCCCCTAGTAACCGCCGATGACGCCGCGGTGATGTCGAATTTTCTCAAATCCCTCACTCCACCGCCCTCGGGCTGGTCTGAAACAACCCCATTCTGCCAATGGAAGGGTATCCAATGCGATTCATCCAGCCACGTGACCAGCATAAGCCTCGCTTCGCAGTCCCTCACCGGAACACTCCCCTCGGATCTCAATTCCCTCTCTCAACTCCGCACTCTCTCCCTCCAAGACAATTCCCTCACCGGCACCCTCCCTTCTCTCTCCACCCTTTCTTTCCTCCAAACCGTCTACTTAAACCGCAACAACTTCTCCTCCGTGTCCCCCACCGCCTTCGCCTCCCTAACCTCCCTCCAAACCCTCAGCCTCGGCTCCAACCCTGCTCTCCAACCCTGGTCCTTCCCCACCGACCTCACTTCCTCCTCTAACCTAATCGACCTCGACCTCGCCACCGTATCCCTCACCGGTCCCTTGCCGGACATTTTCGACAAATTCCCTTCCCTTCAACACCTTCGCCTCTCTTACAACAACCTCACCGGCAATTTACCCTCCTCTTTCTCCGCCGCCAACAATCTCGAAACGCTCTGGCTCAACAACCAGGCCGCCGGCTTGTCCGGTACCCTCCTCGTCCTCTCCAACATGTCTGCATTAAACCAGTCCTGGCTCAATAAGAACCAGTTCACCGGTTCCATACCGGATTTATCGCAATGCACGGCTTTGTCTGACTTGCAGCTCAGGGATAACCAGTTAACTGGTGTGGTTCCCGCTTCATTGACAAGTCTTCCTAGTTTGAAGAAAGTTTCTCTGGATAATAATGAGCTTCAGGGGCCTGTGCCCGTGTTTGGGAAAGGTGTGAATGTTACTCTCGATGGGATTAATAGTTTTTGTCTTGATACTCCTGGGAATTGTGATCCCAGGGTGATGGTTTTGCTGCAGATTGCCGAGGCATTCGGGTATCCGATTCGGTTGGCAGAGTCGTGGAAGGGGAATGATCCGTGTGATGGTTGGAACTATGTTGTGTGTGCTGCCGGAAAGATTATTACTGTCAATTTCGAGAAACAGGGTTTGCAGGGTACCATCTCCCCTGCATTTGCCAATTTGACTGACTTGAGGACTTTGTTTCTCAATGGCAATAATTTGATCGGTTCTATACCTGATAGTTTGATCACTTTGCCTCAGCTTCAGACTCTTGATGTGTCTGACAACAACCTCTCTGGATTGGTTCCTAAGTTCCCACCAAAGGTGAAGTTGGTGACTGCGGGAAATGCTTTGCTTGGGAAACCCCTTAGTCCTGGAGGTGGACCAAGTGGAACTACTCCTTCTGGGTCTTCGACCGGTGGAAGTGGTGGTGAATCCTCAAAGGGTAATTCTTCGGTGTCGCCAGGTTGGATTGCTGGTATAGTTGTTATTGTGTTGTTTTTTATTGCAGTGGTGTTGTTTGTGTCTTGGAAGTGTTTTGTCAACAAGCTGCAGGGGAAGTTCAGTAGGGTTAAAGGTCATGAAAATGGGAAAGGAGGCTTTAAACTTGATGCTGTCCATGTTTCTAATGGATATGGTGGTGTTCCAGTTGAGTTGCAAAGCCAGAGCAGTGGTGATCGCAGTGACCTTCATGCTTTAGATGGTCCAACATTTTCTATCCAAGTTCTTCGACAAGTGACGAATAATTTCAGCGAGGAGAACATTTTAGGCAGGGGAGGGTTTGGAGTAGTTTATAAGGGGGAGTTGCATGATGGAACAAAAATTGCTGTTAAGAGGATGGAATCTGTTGCAATGGGGAACAAAGGTCAGAAAGAGTTCGAAGCAGAGATTGCACTTCTTAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTCTAGGGTATTGCATCAATGGCAATGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGTACATTAACACAGCACCTGTTTGAGTGGCAGGAGCATGGGTATGCTCCTTTGACTTGGAAGCAAAGGGTAGTAATAGCTTTGGATGTAGCGCGGGGGGTGGAATACTTGCACAGTTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCCTCAAACATACTACTAGGCGATGACATGAGAGCAAAGGTTGCTGATTTTGGGTTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGATATCTTGCACCTGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGAGTAGTTCTGATGGAACTTATCACCGGTAGAAAGGCATTGGATGATACTGTGCCAGATGAAAGGTCTCACTTGGTGACATGGTTCCGTAGGGTACTAATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAATTCTCAATCCAGATGAGGAAACCATGGGAAGCATATATACAGTGGCCGAGCTGGCAGGCCATTGCACTGCTCGCGAACCATACCAAAGGCCGGATATGGGTCATGCAGTGAACGTCTTGGTTCCTCTTGTGGAGCAATGGAAACCTACTAGCCATGATGAAGAAGAGGAAGACGGCTCTGGCGGTGACCTTCATATGAGCCTTCCTCAAGCTCTACGAAGGTGGCAAGCCAACGAAGGCACTTCCTCAATATTTAATGACATTTCCATCTCACAAACCCAATCAAGCATCTCCTCTAAACCTGCAGGGTTTGCAGACTCCTTTGATTCAATGGATTGCCGTTAA 2763 0.4814 MSLPKTLLSLFLLLTIPLVTADDAAVMSNFLKSLTPPPSGWSETTPFCQWKGIQCDSSSHVTSISLASQSLTGTLPSDLNSLSQLRTLSLQDNSLTGTLPSLSTLSFLQTVYLNRNNFSSVSPTAFASLTSLQTLSLGSNPALQPWSFPTDLTSSSNLIDLDLATVSLTGPLPDIFDKFPSLQHLRLSYNNLTGNLPSSFSAANNLETLWLNNQAAGLSGTLLVLSNMSALNQSWLNKNQFTGSIPDLSQCTALSDLQLRDNQLTGVVPASLTSLPSLKKVSLDNNELQGPVPVFGKGVNVTLDGINSFCLDTPGNCDPRVMVLLQIAEAFGYPIRLAESWKGNDPCDGWNYVVCAAGKIITVNFEKQGLQGTISPAFANLTDLRTLFLNGNNLIGSIPDSLITLPQLQTLDVSDNNLSGLVPKFPPKVKLVTAGNALLGKPLSPGGGPSGTTPSGSSTGGSGGESSKGNSSVSPGWIAGIVVIVLFFIAVVLFVSWKCFVNKLQGKFSRVKGHENGKGGFKLDAVHVSNGYGGVPVELQSQSSGDRSDLHALDGPTFSIQVLRQVTNNFSEENILGRGGFGVVYKGELHDGTKIAVKRMESVAMGNKGQKEFEAEIALLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWQEHGYAPLTWKQRVVIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQILNPDEETMGSIYTVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHDEEEEDGSGGDLHMSLPQALRRWQANEGTSSIFNDISISQTQSSISSKPAGFADSFDSMDCR* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0899 920 Gene3D Transferase(Phosphotransferase) domain 1 648 868 - -
Gso8g0899 920 Pfam Leucine rich repeat N-terminal domain 22 56 IPR013210 -
Gso8g0899 920 Pfam Leucine rich repeat N-terminal domain 323 355 IPR013210 -
Gso8g0899 920 ProSiteProfiles Protein kinase domain profile. 570 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0899 920 MobiDBLite consensus disorder prediction 440 471 - -
Gso8g0899 920 SUPERFAMILY L domain-like 24 429 - -
Gso8g0899 920 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 7 920 - -
Gso8g0899 920 MobiDBLite consensus disorder prediction 448 471 - -
Gso8g0899 920 ProSiteProfiles Leucine-rich repeat profile. 84 106 IPR001611 GO:0005515
Gso8g0899 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Gso8g0899 920 MobiDBLite consensus disorder prediction 901 920 - -
Gso8g0899 920 Pfam Protein tyrosine and serine/threonine kinase 573 808 IPR001245 GO:0004672|GO:0006468
Gso8g0899 920 Gene3D Ribonuclease Inhibitor 319 442 IPR032675 -
Gso8g0899 920 Gene3D Ribonuclease Inhibitor 21 315 IPR032675 -
Gso8g0899 920 Gene3D Phosphorylase Kinase; domain 1 537 647 - -
Gso8g0899 920 PANTHER OSJNBA0070M12.3 PROTEIN 7 920 - -
Gso8g0899 920 Pfam Leucine rich repeat 377 418 IPR001611 GO:0005515
Gso8g0899 920 SMART serkin_6 570 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0899 920 SUPERFAMILY Protein kinase-like (PK-like) 549 855 IPR011009 -
Gso8g0899 920 Pfam Leucine Rich Repeat 181 201 IPR001611 GO:0005515
Gso8g0899 920 CDD STKc_IRAK 576 849 - -
Gso8g0899 920 SMART LRR_typ_2 381 402 IPR003591 -
Gso8g0899 920 SMART LRR_typ_2 179 202 IPR003591 -
Gso8g0899 920 SMART LRR_typ_2 275 298 IPR003591 -
Gso8g0899 920 SMART LRR_typ_2 405 427 IPR003591 -
Gso8g0899 920 SMART LRR_typ_2 105 128 IPR003591 -
Gso8g0899 920 ProSitePatterns Protein kinases ATP-binding region signature. 576 598 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0899 Gso-Chr8 8330460 8334543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0899 61 864 Receptor kinase-like Gene Family AT1G55610 31.910 3.79e-93 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gso8g0899 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0899 - - gmx:547710 1712.97