Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0890 ATGGATGAGGATTTCGAGTTCCCAAGTGCTGGCAACATGGAAATGCCAGAGGAGGAAGAGATTGAGAGTCCGATTCTGAAGGTTGGGGAGGAGAAGGAGATTGGGAAAATGGGGCTGAAGAAGAAGTTGCTAAAGGAAGGTGAAGGTTGGGACATCCCTGACTGTGGAGACCAAGTTGAAGTGCATTATACTGGAACCTTGCTTGATGGAACCAAATTTGATTCTAGCCGTGATAGGGGCACCCCTTTCAAGTTCAGGCTAGGCCAAGGGCAAGTGATCAAGGGATGGGATGAAGGTATCAAAACCATGAAGAAAGGTGAGAATGCCCTTTTCACAATACCCCCAGAATTGGCTTATGGAGAGTCAGGTTCTCCTCCCACTATTCCCCCCAATGCAACTCTGCAGTTTGATGTGGAGTTGCTGTCATGGACAAGTGTGAAGGACATTTGCAAGGATGGAGGAATTTTGAAGAATATAATTACTGAAGGGGAGAAATGGGATAATCCTAAGGATCTGGATGAAGTGTTTGTTAAGTATGAAGCTAGGCTTGAAGATGGGATAGTCATTTCAAAATCTGATGGGGTGGAATTCACTGTGGAAGAGGGGTATTTCTGTCCTGCTTTGGCCAAGGCTGTGAAAACCATGAAGAAGGGAGAGAAAGTTCTCTTGAATGTGAAGCCACAATATGCATTTGGTGAGAGTGGAAGGCCAGCCTCAGGAGATGAAGGTGCCGTACCTCCAAATGCTTCTCTTCAAGTGGATCTTGAGTTGGTCTCGTGGAAGACTGTGTCTGACATTACCAACGATAGAAAGGTTCTCAAGAAGACTTTGAAGGAAGGGGAGGGATATGAACGACCAAATGATGGAGCTGTAGTTCAAGTGAAACTGATTGGCAAGCTGCAAGATGGAACTGTCTTCATTAAGAAGGGCTACGATGATCAACAGCCATTCGAGTTCAAAATTGATGAAGAGCAAGTTACTGATGGACTTGACCAAGCTGTGAAGAGCATGAAGAAAGGGGAAATTGCATTGCTGATCATACAACCTGAATATGCTTTTGGTCCATCTGGATCCTCTCAGGAATTGGCTAATGTTCCTCCTAATTCTACTGTGTACTATGAAGTTGAGCTGCTTTCTTTTATAAAGGAAAAGGAATTGTGGGATCTGAATACGCAAGAGAAGATTGAGGCAGCTGGGAAGAAAAAGGAAGAAGGGAATGCTTTATTTAAGGTTGGCAAATATGAAAGAGCTTCAAAGAGATATGAAAAGGCCATAAAGTTTGTTGAGTATGATTCCTCCTTCAGTGATGAGGAGAGACAGAAGACTAAGGCATTGAAAATCACATGCAATCTCAACAATGCAGCCTGTAAGTTGAAGCTAAAGGACTACAAACAGGCAGAGAAGATGTGCACAAAGGTTTTAGAGCTTGATAGTAGAAATGTAAAAGCACTCTATCGGAGGGCACAAGGGTATCTCCATCTTGTGGACTTGGATCTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAACAGGGATGTAAAGATGGAGTACAAAATTTTGAAGCAGAAAGTGAGAGAATACAACAAGAAGGACGCACAATTTTACGGCAGCATATTTGCAAAAATGAATAAACTAGAGCAAGCAAGAACAGCAACAGCAAAGCAGGAGCCTGTGCCAATGACTATTGACAGCGAAGCTTAA 1713 0.4332 MDEDFEFPSAGNMEMPEEEEIESPILKVGEEKEIGKMGLKKKLLKEGEGWDIPDCGDQVEVHYTGTLLDGTKFDSSRDRGTPFKFRLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKNIITEGEKWDNPKDLDEVFVKYEARLEDGIVISKSDGVEFTVEEGYFCPALAKAVKTMKKGEKVLLNVKPQYAFGESGRPASGDEGAVPPNASLQVDLELVSWKTVSDITNDRKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFIKKGYDDQQPFEFKIDEEQVTDGLDQAVKSMKKGEIALLIIQPEYAFGPSGSSQELANVPPNSTVYYEVELLSFIKEKELWDLNTQEKIEAAGKKKEEGNALFKVGKYERASKRYEKAIKFVEYDSSFSDEERQKTKALKITCNLNNAACKLKLKDYKQAEKMCTKVLELDSRNVKALYRRAQGYLHLVDLDLAEMDIKKALEIEPDNRDVKMEYKILKQKVREYNKKDAQFYGSIFAKMNKLEQARTATAKQEPVPMTIDSEA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0890 570 SUPERFAMILY FKBP-like 37 155 - -
Gso8g0890 570 SUPERFAMILY FKBP-like 263 398 - -
Gso8g0890 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 381 IPR001179 GO:0003755
Gso8g0890 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Gso8g0890 570 SMART tpr_5 481 514 IPR019734 GO:0005515
Gso8g0890 570 SMART tpr_5 447 480 IPR019734 GO:0005515
Gso8g0890 570 SMART tpr_5 398 431 IPR019734 GO:0005515
Gso8g0890 570 SUPERFAMILY TPR-like 386 547 IPR011990 GO:0005515
Gso8g0890 570 Gene3D - 262 383 IPR046357 GO:0003755
Gso8g0890 570 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 381 551 - -
Gso8g0890 570 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 268 - -
Gso8g0890 570 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 270 380 - -
Gso8g0890 570 Pfam Tetratricopeptide repeat 482 514 IPR019734 GO:0005515
Gso8g0890 570 Gene3D - 32 148 IPR046357 GO:0003755
Gso8g0890 570 Gene3D Tetratricopeptide repeat domain 384 541 IPR011990 GO:0005515
Gso8g0890 570 Gene3D - 149 261 IPR046357 GO:0003755
Gso8g0890 570 SUPERFAMILY FKBP-like 148 264 - -
Gso8g0890 570 MobiDBLite consensus disorder prediction 1 19 - -
Gso8g0890 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 378 IPR001179 GO:0003755
Gso8g0890 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 258 IPR001179 GO:0003755
Gso8g0890 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 141 IPR001179 GO:0003755
Gso8g0890 570 Coils Coil 514 534 - -
Gso8g0890 570 ProSiteProfiles TPR repeat profile. 481 514 IPR019734 GO:0005515
Gso8g0890 570 PANTHER PEPTIDYLPROLYL ISOMERASE 381 551 - -
Gso8g0890 570 PANTHER PEPTIDYLPROLYL ISOMERASE 270 380 - -
Gso8g0890 570 PANTHER PEPTIDYLPROLYL ISOMERASE 1 268 - -
Gso8g0890 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Gso8g0890 570 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0890 Gso-Chr8 8262156 8265690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0890 15 570 Calmodulin-binding Proteins AT5G48570 73.750 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0890 K09571 - gmx:100819747 1086.25