LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso8g0880	ATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTCTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGTCCCTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTTTAAGCAGCAAAGAGCTGGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAGGAGCACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGAGTTGAAGAGATGGGATATGGCAGGAATCCAGCTCAAACTCATGGTGAAGCCCTCTTTCAACAAATGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGCCCAAGCATGAGCAATTACATGGCAGGATGGCTACCATAG	726	0.4711	MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRLEGYQINPLQLNPGVEEMGYGRNPAQTHGEALFQQMECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP*	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso8g0880	241	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Gso8g0880	241	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Gso8g0880	241	Coils	Coil	126	146	-	-
	Gso8g0880	241	CDD	MADS_MEF2_like	2	76	IPR033896	GO:0000977\|GO:0045944
	Gso8g0880	241	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Gso8g0880	241	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Gso8g0880	241	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Gso8g0880	241	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG	1	228	-	-
	Gso8g0880	241	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	228	-	-
	Gso8g0880	241	ProSiteProfiles	K-box domain profile.	89	179	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gso8g0880	241	Coils	Coil	152	172	-	-
	Gso8g0880	241	Gene3D	-	13	83	IPR036879	GO:0003677\|GO:0046983
	Gso8g0880	241	Pfam	K-box region	91	173	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gso8g0880	241	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Gso8g0880	241	SUPERFAMILY	SRF-like	2	76	IPR036879	GO:0003677\|GO:0046983
	Gso8g0880	241	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso8g0880	Gso-Chr8	8172273	8179773	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso8g0880	1	241	MADS-box Gene Family	AT1G24260	74.797	2.32e-119	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Gso8g0880		K-box	4.8e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso8g0880	-		-	gmx:100805078	469.159

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso5g1269	5	36216666	36225192	Gso8g0880	8	8172273	8179773	GST
	Gso8g0880	8	8172273	8179773	Gso18g0042	18	384007	389092	PCT
	Gso8g0880	8	8172273	8179773	Gso13g1581	13	31098552	31103008	PCT