Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0879 ATGGGGAAGAAGAAGGTGGAGATAAAGCGAATCGAGAACAAAAGCACTCGGCAGATAACATTCTCCAAGAGGCGCAATGGATTGATGAAGAAAGCTCGCGAGCTATCCATTCTCTGCGATGCGAAGGTGGCGCTGCTCATCTTCTCCAGCACCGGAAAGCTCTACGAGCTCTGCAACGGTGACAGTTTGGCCGAGGTCGTGCAGCAATATTGGGATCATTTAGGAGCGAGCGGTACTGACACAAAGTCGCAGGAACTATGCTTTGAAATTGCAGATATCTGGTCTGGTTCAGCGTTTTCTCAAATGATCAAAAGGCACTTCGGTGTTTCTGAACTTGAGCATCTGAGTGTGTCTGACCTTATGGAACTAGAGAAACTGACTCATGCTGCTCTTTCGCGAATCAGATCAGCAAAGATGCGATTGATGATGGAATCTGTAGTGAATCTTAAGAAAAAGATTGAGGCACTAGAAAAAACTAATGACGTCAATAACGTGGTGACACGGTCTATTGACTGTGATCAAACAGATGGGGTGACGCATAATCTGTTCCCAGGTCTCTAA 561 0.4599 MGKKKVEIKRIENKSTRQITFSKRRNGLMKKARELSILCDAKVALLIFSSTGKLYELCNGDSLAEVVQQYWDHLGASGTDTKSQELCFEIADIWSGSAFSQMIKRHFGVSELEHLSVSDLMELEKLTHAALSRIRSAKMRLMMESVVNLKKKIEALEKTNDVNNVVTRSIDCDQTDGVTHNLFPGL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0879 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gso8g0879 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso8g0879 186 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Gso8g0879 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso8g0879 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso8g0879 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso8g0879 186 PANTHER MADS-BOX PROTEIN FLOWERING LOCUS C 1 162 - -
Gso8g0879 186 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gso8g0879 186 Pfam K-box region 80 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso8g0879 186 PANTHER MADS BOX PROTEIN 1 162 - -
Gso8g0879 186 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Gso8g0879 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso8g0879 186 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0879 Gso-Chr8 8161079 8170705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0879 1 160 MADS-box Gene Family AT2G03710 46.061 4.42e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso8g0879 K-box 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0879 K09264 - gmx:100778392 366.696