Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0876 ATGACACCTGGTTACGAGTATGATATTAATGATCTGCATCAAGAGGCTCAAGCCAGATGGTTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGTTCACCCAAGAGGTCCCACAACAGCCAACCAGTGGATCCCTGTTTCTGTTTAACAAAAGAATCCTGCGATACTTCCGTAGAGATGGTCATAACTGGCGTAAGAAAAGTGGTGGAAGAACTGTGGGAGAAGCACACGAAAGGCTGAAGGTTCTAAATGTTGAAGCCTTAAATTGTTACTATGCACGCGGAGAGCAGAACCCTGCTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTATAGGAACACAAGTGAGGGAAAGCTAAGTTCTGGAGCTGGGGCACAATTGTCACCAAGTTCTTCTGTCTATACTCAGAGTCCTAGCCCATATTCTACTCAGAATCCAGGGTCAACATCCATACTTGGTGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGGTCTACAAAAGTTACATCTGAGATATTCGTTCTGAACAATAAAATGGGTCACATGGATTGGGCAGATACAGAATCAGGAACCTCATCTGAACTCGAGGTTACTCAAGCTTTGCGCCGATTGGAGGTACAGTTAAGTTTGAATGAGGACAACTTTGAAGATATTGTTTCCTTCGGCAGTAAGCATGAAACTGTTCATGATTCAAATCCCAAGCACGATCAAAGGGTGATCAGCAATCAAGAGCAATCTGCAGCTTTCTCTAGACCCGATGATCAAGGGCTATTTTATGATGGATGTAATGGAAGGCAAGAGCAGCTGGAATCACATAAGTCCTCATCTGCAGTCAAGTTACCTCAGAAAAATGTATACATGCCAGCTGAAAATGAAAATTCAGTATCTTCTGCAAGAAGGGTACCAGTTTCCAACCAGGAAAACAGTCACTGGCTCAACTTCAACTGTAATAATTCTGAAAACTCAGCTGTTTTCTCACAACCTCAAGGTGTTGATGAAGTCAAATTTCCTGCCTATTCTTCTATGTTGGAAACACAAGTAATTAATTCTGACTACTATGAAACATTGTTTGACCAAAGCCAAATTGGAGCACCACCAGATGCAAATTCAAGCTTGACTGTTGCACAAAAACAGAAATTTACTATTAAGACTATCTCCCCAGAATGGGGTTATGCCACCGAGACTACCAAGGTCATTGTTGTTGGGTCTTTTCTCTGTCATCCCTCGGATTCTGCATGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTATTGAGATAATTCAGGATGGTGTAATCTCTTGTGAAGCTCCATCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACTGGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATATCATGATAAGACCAATAGTTGCACTCGATGTACTCAATCCGAAACAGAAGCCACTAGAAGTCCAGAAGAGCTGTTATTACTTGTTAGATTAGGGCAGATGCTTCTTTCTGCATCAACAATAAAGAATGACAACATAGAATCTGGAATTCCTCTAATAAAACCGAAAGCTGATGATGATTCATGGAGCCATATTATAGATGCTCTTCTAGTTGGCAGTGGAACGTCGAGTGGTACTGTTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGTTTCAACAGTGGCTTTCTTTCAGATCACGGGAAAAAGATGAAGAGACAGGCTGCTCTTTGTCCAAGAAAGAGCAAGGGATTATTCACATGGTTGCTGGGTTAGGTTTTGAGTGGGCCTTGAACCCTATTCTCACGTGTGGAGTTAATATAAATTTCCGTGACATCAATGGATGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAAATGCACAAGATCCAACTGGTAAAACTGCTGCATCTATTGCAGCCAGCAGTGGGCACAAGGGACTGGCAGGGTATCTTTCAGAGATAGCTGTAACAAGCCATTTGTCATCGCTTACACTGGAAGAGAGTGAATCATCTAAAAGTTCTGCTTATCTTCAGGCGGATATGACTGTTAACAGTGTCTCCAAGGAAAATCTTACTGCCAATGAGGATCAGGCGTCACTCAAAGATACCTTGGCTGCTATCAGAAATGTAACTCAGGCAGCTGCGCGGATACAATCTGCTTTTCGCTCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGCAACTGCTAGTACAGGTGGCATTGGTACCATTTCAGAGATTTCTGCTATGTCAAAACTTGCCTTTCGGAACTCACACGAATATAATTCAGCTGCTTTATCCATTCAGAAGAAATATCGAGGTTGGAAAGGTCGTAGAGATTTCTTAGCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCTTGGACAAGGTTGTCCTACGATGGAGGAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACATCAATGAAAATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAAAAATTAGATGTAGAAATTGAAGAGGCTGTTTCAAGGGTGCTGTCCATGGTTGACTCACCGGATGCTCGTGAGCAATATCATCGCATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGCGGGTACGAGTGACGAAGCATCATTATCAACTTCTGTAGGAGATGACTTATTTATGGATGATTTTTATCCATTTCCCTAA 2859 0.425 MTPGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQFTQEVPQQPTSGSLFLFNKRILRYFRRDGHNWRKKSGGRTVGEAHERLKVLNVEALNCYYARGEQNPAFQRRSYWMLDPAYEHIVLVHYRNTSEGKLSSGAGAQLSPSSSVYTQSPSPYSTQNPGSTSILGDSYEPNQSFSSPGSTKVTSEIFVLNNKMGHMDWADTESGTSSELEVTQALRRLEVQLSLNEDNFEDIVSFGSKHETVHDSNPKHDQRVISNQEQSAAFSRPDDQGLFYDGCNGRQEQLESHKSSSAVKLPQKNVYMPAENENSVSSARRVPVSNQENSHWLNFNCNNSENSAVFSQPQGVDEVKFPAYSSMLETQVINSDYYETLFDQSQIGAPPDANSSLTVAQKQKFTIKTISPEWGYATETTKVIVVGSFLCHPSDSAWACMFGDVEVPIEIIQDGVISCEAPSHLPGKVTLCITSGNWESCSEVREFEYHDKTNSCTRCTQSETEATRSPEELLLLVRLGQMLLSASTIKNDNIESGIPLIKPKADDDSWSHIIDALLVGSGTSSGTVDWLLEELLKDKFQQWLSFRSREKDEETGCSLSKKEQGIIHMVAGLGFEWALNPILTCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPNAQDPTGKTAASIAASSGHKGLAGYLSEIAVTSHLSSLTLEESESSKSSAYLQADMTVNSVSKENLTANEDQASLKDTLAAIRNVTQAAARIQSAFRSHSFRKRRAREATASTGGIGTISEISAMSKLAFRNSHEYNSAALSIQKKYRGWKGRRDFLALRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDINENEDEDILKVFRKQKLDVEIEEAVSRVLSMVDSPDAREQYHRMLEKYRQAKAELAGTSDEASLSTSVGDDLFMDDFYPFP* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0876 952 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Gso8g0876 952 ProSiteProfiles IQ motif profile. 796 825 IPR000048 GO:0005515
Gso8g0876 952 SUPERFAMILY Ankyrin repeat 597 688 IPR036770 -
Gso8g0876 952 MobiDBLite consensus disorder prediction 134 183 - -
Gso8g0876 952 Pfam IQ calmodulin-binding motif 821 840 IPR000048 GO:0005515
Gso8g0876 952 Pfam IQ calmodulin-binding motif 798 816 IPR000048 GO:0005515
Gso8g0876 952 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Gso8g0876 952 SMART iq_5 744 766 IPR000048 GO:0005515
Gso8g0876 952 SMART iq_5 795 817 IPR000048 GO:0005515
Gso8g0876 952 SMART iq_5 818 840 IPR000048 GO:0005515
Gso8g0876 952 CDD IPT 398 483 - -
Gso8g0876 952 SMART CG_1_2 12 130 IPR005559 GO:0003677
Gso8g0876 952 Pfam IPT/TIG domain 398 469 IPR002909 -
Gso8g0876 952 ProSiteProfiles Ankyrin repeat profile. 627 659 IPR002110 GO:0005515
Gso8g0876 952 SUPERFAMILY E set domains 398 481 IPR014756 -
Gso8g0876 952 Gene3D Immunoglobulins 392 487 IPR013783 -
Gso8g0876 952 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 941 - -
Gso8g0876 952 Coils Coil 912 932 - -
Gso8g0876 952 Pfam Ankyrin repeats (3 copies) 609 687 IPR002110 GO:0005515
Gso8g0876 952 Gene3D - 522 692 IPR036770 -
Gso8g0876 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 842 IPR027417 -
Gso8g0876 952 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 5 941 - -
Gso8g0876 952 SMART ANK_2a 666 695 IPR002110 GO:0005515
Gso8g0876 952 SMART ANK_2a 627 656 IPR002110 GO:0005515
Gso8g0876 952 ProSiteProfiles Ankyrin repeat region circular profile. 627 653 - -
Gso8g0876 952 Gene3D - 795 844 - -
Gso8g0876 952 ProSiteProfiles IQ motif profile. 746 774 IPR000048 GO:0005515
Gso8g0876 952 ProSiteProfiles IQ motif profile. 819 844 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0876 Gso-Chr8 8141737 8149853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0876 5 942 CAMTA Transcription Factor Family AT1G67310 52.357 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso8g0876 CG-1 6.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0876 K21596 - gmx:100814958 1830.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1262 5 36168958 36179297 Gso8g0876 8 8141737 8149853 GST
Gso18g0045 18 402618 411215 Gso8g0876 8 8141737 8149853 PCT
Gso8g0876 8 8141737 8149853 Gso18g0045 18 402618 411215 PCT