Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0863 ATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACTAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGAACACGAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCAGACGTTTTTGTCGAGGTGTTGGAAGGACAGCCCAGGCTAAGAATAGACACTCTAATGGCCAAGGACGGTGGCCTGTCAAGTCAGCGAAATTCATTCTTGATTTGCTCAAAAATGCTGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCACTGTACATTTCGCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCTCCGTGCCACATAGAGTTAATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGCCCGAGACTAAGTTAACAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGCGCTTCGTCATAG 546 0.4542 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETKLTTSKKSQALRSGASS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0863 181 Gene3D Ribosomal protein L22/L17 1 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gso8g0863 181 MobiDBLite consensus disorder prediction 153 167 - -
Gso8g0863 181 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gso8g0863 181 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gso8g0863 181 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 181 - -
Gso8g0863 181 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gso8g0863 181 MobiDBLite consensus disorder prediction 153 181 - -
Gso8g0863 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Gso8g0863 181 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Gso8g0863 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 181 IPR005721 GO:0003735|GO:0006412|GO:0015934
Gso8g0863 181 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0863 Gso-Chr8 8006534 8009784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0863 1 181 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.293 6.48e-117 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0863 K02880 - gmx:100816536 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1247 5 35994298 35997251 Gso8g0863 8 8006534 8009784 GST
Gso18g0065 18 572387 574309 Gso8g0863 8 8006534 8009784 PCT
Gso13g1556 13 30923606 30925495 Gso8g0863 8 8006534 8009784 PCT
Gso8g0863 8 8006534 8009784 Gso18g0065 18 572387 574309 PCT
Gso8g0863 8 8006534 8009784 Gso13g1556 13 30923606 30925495 PCT