Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0858 ATGATGGATGTTGCTGAGGTTGAGGAAAATCTGTTTGCCGCAAGTGATGCCAAGTTACATGGACAGATGTGCAAGACTCTTTCTATAATCTATTGCAAAGTACTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGAGATTCTGTCCTCCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAATTTGCAACAATAGAATTTGCACTTGATCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAACAGGGAAGAAAGTTGAATGACTCTAATGACAGCAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATTGCATCTTCAAGAGCAGCTCTTGCCGAAAGAAGAGCTCTCAAGAAACTCATAGTGAGGGCTCGATCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAACGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCAGTGTTCAGGGATCCATTGAGGATAGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAGCTTTCAAAACTCAGTTGCTTTAATTTCAAACCAAATAATAGTAGGAAATCAGGGCAGATGCCTCTTCCGCCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTACCATTGCTTCTGGGCAAACTTATGAAAGGGTTTGGATAGAGAAATGGTTTAGTGATGGGCACAACAACTGCCCAAAGACCCAGCAGAAGCTTTCACATCTTTGTTTGACTCCTAATTATTGTGTTAAGGGCCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATCTTAACTACTGGGGAATGGTATTATCAGAGTCTGAATCTACAAATTCAAAATCTATAGATAGTGTTAGCTATTGCAAGTTGAAGGGTGTCCTTGTGGTTCCTTTGGAAGAGAGCGGTATCTCAGAGGAATATGTGGAAAATGGAACTGAAAGTGTTTCTGCACAAGAGGAAGACTCTGAGCAGTATTTTAGCTTTCTGAAAGTCTTGACTGAGGGGAACAATTGGAGGAAGCAATGTGAAGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTTTGCAGTTTTTGCAATCAGCTTTGCGTGAAGGTAGTTTGATGGCTCTGGAAAGTGGAGCAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAAAACTAGTTCTTATGGTTGTACAACTGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCGTGACTCAGGCTGTCCAGTTCCTAATCCAGCTTCTTCAATCTGACTCTGATGTTCAATGCAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATTCCATGCCTCCTTTCATTTGGCATCATTAGTGGCTTACAATCCCTTCTTGTAGGCGAGGGGGATAGCATTTGGACAGAAAAATGTGTAGCTGTTTTGATAAATTTAGCAACTTCTCAAGTTGGAAGGGAGGAAATCGTATCAACTCCTGGACTCATCGGTGCATTGGCTTCAATATTGGACACCGGGGAGCTCATAGAACAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAATAGAAGTGAGGAATGTAGTGAGATGGTCCTGCAGGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGAACTCCAAGAGGTCAAGAAAAAGCTCAGAAACTCTTAATGTTGTTCCGAGAGCAGCGACGGGACCCTTCACCAGTTAAGACACATAAGTGCCCACCTGAAACTGCTAGTGATTTGTCTATGCCACCTGCTGAAATGAAACCGATATGCAAGTCGATTTTGAGAAGAAAGTCCGGGAGAGCTTTTAGCTTTTTCTGGAAAAACAAGAGCTATTCTGTATACCAGTGTTAA 2301 0.4159 MMDVAEVEENLFAASDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKLNDSNDSNELESFHQAATRLGIASSRAALAERRALKKLIVRARSEEDKRKESIIAYLLHLMRKYSKLFRNEFSDDNDSQGSAPCSPSVQGSIEDSVPGSHCQAFDRQLSKLSCFNFKPNNSRKSGQMPLPPEELRCPISLQLMYDPVTIASGQTYERVWIEKWFSDGHNNCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGMVLSESESTNSKSIDSVSYCKLKGVLVVPLEESGISEEYVENGTESVSAQEEDSEQYFSFLKVLTEGNNWRKQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSALREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGVTQAVQFLIQLLQSDSDVQCKQDSLHALYNLSTVPSNIPCLLSFGIISGLQSLLVGEGDSIWTEKCVAVLINLATSQVGREEIVSTPGLIGALASILDTGELIEQEQAVSCLLILCNRSEECSEMVLQEGVIPALVSISVNGTPRGQEKAQKLLMLFREQRRDPSPVKTHKCPPETASDLSMPPAEMKPICKSILRRKSGRAFSFFWKNKSYSVYQC* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0858 766 Gene3D - 427 545 IPR011989 -
Gso8g0858 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Gso8g0858 766 SUPERFAMILY ARM repeat 429 707 IPR016024 -
Gso8g0858 766 SUPERFAMILY RING/U-box 280 356 - -
Gso8g0858 766 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Gso8g0858 766 PANTHER U BOX DOMAIN-CONTAINING 2 751 - -
Gso8g0858 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Gso8g0858 766 Gene3D - 546 709 IPR011989 -
Gso8g0858 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 751 - -
Gso8g0858 766 CDD RING-Ubox_PUB 285 327 IPR045210 -
Gso8g0858 766 SMART arm_5 541 582 IPR000225 GO:0005515
Gso8g0858 766 SMART arm_5 456 500 IPR000225 GO:0005515
Gso8g0858 766 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Gso8g0858 766 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0858 Gso-Chr8 7954481 7959513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0858 2 765 U-box Gene Family AT1G24330 65.938 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0858 - - gmx:100814944 1489.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1242 5 35929633 35934594 Gso8g0858 8 7954481 7959513 GST
Gso18g0071 18 609706 615010 Gso8g0858 8 7954481 7959513 PCT
Gso13g1550 13 30881961 30887325 Gso8g0858 8 7954481 7959513 PCT
Gso8g0858 8 7954481 7959513 Gso18g0071 18 609706 615010 PCT
Gso8g0858 8 7954481 7959513 Gso13g1550 13 30881961 30887325 PCT