Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0851 ATGGAGTCCGATTCCGACTCCGATGGATCTCACATCTCCGCAACTCCACCAAGAAAATCAACTCCATCACCACCACCACCACCACCTGTAGTAGTTTCAAAAAAATCCAGAATCAGAATCAAACCTTCAAAATCAAAACCAAAACCAGACCCTTCCGGATCCTCCAAAATCCAGTCCAAATCCGACCCGATCCAGCAAGCCACCCTTCTCTCCCTCCCCACCGATCTACCCTTCCAAATCCGGCGACCTTCCGACGCGCCGTCGATTTCGTACTCCATCGAAACCCTCCCCGCCGGCTACTTCTCCTCCTCCCATTCTGCTTCCTTCTCGAAAATTCGAAGACCTCTCCTCAATCTAGAACCTTCTGAAGTCGAACAACCGGTTTTTACTTCCGTCGCGTCTGACTCACGCGCCGAGGGCGCCGACTTGAGGAAGCGTGGGAAGAGCCAGCTTCCCAACCTGATTGGCTCCAGTGCGCCAATGCCGAGCGTGAAGCCGCGAACATCCGGAGCCGGCGAAGGGAACTTCGTGAAGCTCAACATGAATGGCAAGAGAAAGAAGTTCCTCAACAAGAGAGGGAAATTTGGCGGGAAAAGGTACAAGAGTTGGAGATTCAAATCGCAGCGCGAGAAGGAGGAGGAGCAAGAAGAGGCTGTTGGAGAGTTGAAACAGAGAGGGGGTTGTAAGAGGAGGGAGATTGATGGTGATGCAGTGGAGGAGGCTGCGACCGCAGCACGCAACGTGCCTTCGGAGGAGAATTTGGTGAAGCTGTTGAGATTGGTTCATGGTTATGATTGCTTTCGAGATGGGCAGGTTGAGGCGATTAAAATGGTTCTTGCCGGGAAGTCTAGTGTGGTTGTTTTGCCGACCGGTGCAGGAAAGTCGCTGTGTTATCAGTTGCCTGCTGTGATCTTGCCTGGTGTTACATTGGTTGTTAGTCCATTGGTAGCTTTGATGATTGATCAGTTAAGGCAATTGCCTCATGTGATTATGGGTGGTCTTCTATCCAGCACTCAGACACCTGAAGAAGCCTCTGAATCACTCAAGCAGCTTCGTCAAGGGGGGATAAAGGTGCTTTTTGTTTCACCAGAGCGGTTTCTGAATGAGGAGTTTCTGTCTACTATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCATCTTTTATGAGACTTAGAGCATCTCTGCTTCATAAGACACTTAATGTTCGTTCTGTGCTTGCTATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCTCTAGACATTCCTTCCACAAATCTTATTCAGAAGGCGCAGTTAAGGGACAATTTTCATTTGTCAGTGTCTTTGGTCAGAAATAGAATGAAAGACCTACTGAATCTGATAAAGTCTCCTCCTTTTGTGGAAGTTCAAAGCATGATCATATACTGCAAATTTCAGTATGAAACTGATCAAATTAACAGATATTTGAATGATAACAACATCTTGGCAAAGAGTTATCATAGTGGTATCTCTGCAAAGGAACGTAGCTATGTACAGGAGTTGTTTAATTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTCGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTACAGGAAATAGGACGTGCTGGAAGGGATGGGAGGTTGTCGTACTGTCACCTATTTTATGATGATGAGACATATTTCAAACTTCGTAGTCTAACGCACAGTGAAGGAGTAGATGAATATGCAGTGAACAAATTTCTGCGTGAAGTGTTTCCTGCTGACAAAAACTCCTGTGGGAAAATCTGTTCATTAATCAAAGAATCTGCTTCACGCAGATTTGATATGAAAGAAGAGGTGATGCTTACACTTTTGACACGCTTGGAGTTGGGTGATGTACAGTACTTGCAGTTACATCCACAGATAAATGTAACTGGCACTTTGAATTTTCACAAGTCTCCTCCGCCATTACTTGCTCAGAAGGTTTCTGCTATAGCTGTAATTCTAAAAAGATCTGAAACCAAGCATGGGCAATATATTTTTGACATTCCAACTGTGGCAAATGACATGGGGGTTACAGCAGTGGAATTAATAAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCAACAGACTTGTTATCTCTATCAGCAGATATTACCCGATGGTTATCGGAAGTTGAAAATTGTAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCATTAAATCTATGTGATACGATGCAAGGTTGCAGTGGTGCCAATCATACACCATGCTTGCAAAGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGATTTCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTGCAGAGCAATTCACAGGCTCGATTTACACCAAGAGCCGTTGCGAGGGTAATGCATGGAATTGCAAGCCCAGCTTATCCTTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGCATATAGACTTTCAGGTAGTGATGGAAGCAGCAAAGGAAGAACTTAAGAATTTTGTTGGAAAAGATACACTCTAG 2715 0.4424 MESDSDSDGSHISATPPRKSTPSPPPPPPVVVSKKSRIRIKPSKSKPKPDPSGSSKIQSKSDPIQQATLLSLPTDLPFQIRRPSDAPSISYSIETLPAGYFSSSHSASFSKIRRPLLNLEPSEVEQPVFTSVASDSRAEGADLRKRGKSQLPNLIGSSAPMPSVKPRTSGAGEGNFVKLNMNGKRKKFLNKRGKFGGKRYKSWRFKSQREKEEEQEEAVGELKQRGGCKRREIDGDAVEEAATAARNVPSEENLVKLLRLVHGYDCFRDGQVEAIKMVLAGKSSVVVLPTGAGKSLCYQLPAVILPGVTLVVSPLVALMIDQLRQLPHVIMGGLLSSTQTPEEASESLKQLRQGGIKVLFVSPERFLNEEFLSTISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLHKTLNVRSVLAMTATATTTTLDAIMSALDIPSTNLIQKAQLRDNFHLSVSLVRNRMKDLLNLIKSPPFVEVQSMIIYCKFQYETDQINRYLNDNNILAKSYHSGISAKERSYVQELFNSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLTHSEGVDEYAVNKFLREVFPADKNSCGKICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLQLHPQINVTGTLNFHKSPPPLLAQKVSAIAVILKRSETKHGQYIFDIPTVANDMGVTAVELINQLYDLKLMGEITYEMKDLAYCYRIIEVPTDLLSLSADITRWLSEVENCKVRKMDAMFNAAYFALNLCDTMQGCSGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFQVVMEAAKEELKNFVGKDTL* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0851 904 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 257 604 IPR004589 GO:0004386|GO:0006310
Gso8g0851 904 Pfam Helicase conserved C-terminal domain 481 576 IPR001650 -
Gso8g0851 904 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 382 391 IPR002464 -
Gso8g0851 904 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 445 IPR014001 -
Gso8g0851 904 CDD SF2_C_RecQ 453 586 - -
Gso8g0851 904 Gene3D - 237 445 IPR027417 -
Gso8g0851 904 SMART helicmild6 496 577 IPR001650 -
Gso8g0851 904 PANTHER ATP-DEPENDENT DNA HELICASE Q4 54 827 - -
Gso8g0851 904 Pfam DEAD/DEAH box helicase 269 431 IPR011545 GO:0003676|GO:0005524
Gso8g0851 904 Gene3D - 453 637 IPR027417 -
Gso8g0851 904 PANTHER DNA HELICASE RECQ FAMILY MEMBER 54 827 - -
Gso8g0851 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 595 IPR027417 -
Gso8g0851 904 MobiDBLite consensus disorder prediction 206 226 - -
Gso8g0851 904 SMART ultradead3 263 459 IPR014001 -
Gso8g0851 904 MobiDBLite consensus disorder prediction 150 176 - -
Gso8g0851 904 MobiDBLite consensus disorder prediction 1 85 - -
Gso8g0851 904 Coils Coil 205 225 - -
Gso8g0851 904 CDD DEXHc_RecQ4-like 255 448 - -
Gso8g0851 904 MobiDBLite consensus disorder prediction 48 73 - -
Gso8g0851 904 MobiDBLite consensus disorder prediction 18 32 - -
Gso8g0851 904 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 472 623 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0851 Gso-Chr8 7901973 7909909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0851 271 609 Eukaryotic Initiation Factors Gene Family AT3G19760 22.222 1.48e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0851 K10730 - gmx:100811214 1689.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1233 5 35864223 35867603 Gso8g0851 8 7901973 7909909 GST