Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0840 ATGGACAATGGTTGCTTCTCTAGTTCTCCACGCCACGATGCTTTTCCAGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCTAACATGGTTGAGAATCCTTGAAAAGATGCTCAAGAAGTGCTTATATGAAGTGACTACATGTTGTTTAGCAACAGAGGCCCTGAAAAAACTTCGTGAAAGGAAAGAAGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAACTTCTGGAGCAAGTAGGACTTGAGATGGATCTTCCTGTTATCATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAACATGTCTTTAGAAAAAGGATGCATGAGGCAAGAGATTTTGAAAGCCATGAGGGTTTTGACTTTGAGGGCATTCACTTAATGAGAAATGGATCAGATCACTCTGATGACGGTAACCTGTTTGCTGTAGAAGAAACTACGTCAATTAAGAAAAGAAAAGATGCAGATAACAAACATGATGACAAAGAATTTGGAGATCATTTTCCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCAAAGCAGTGAATCAAATCGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATCTGATGAATGTTCCATGGTTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCATCAAGTGGAATAAAGCACTCGGATTCACCTTCGAAAGATCTAGGAAGTTTTAGTTTTCTGAACACTGCAAACAAGCAACAAAATGATATTGCCACTGACAGCTTCAGCTATTCAGATGGAACTTTACTAATTCAGATGGATGCTACAAGTTATGAAGGTGATCTCAAGGGAATTGTGTCAGAGCCTACAACAGAAAAAATAAGAGCTTCCACTAGTGAAATTCCGGATCCAAAGGTACAAAAAAGTTCGCAGAAGAGCCTCAACAAACCTTTTACATCTGTAGAGTCATCAGAAGCAAACCATGCAGTCTTTGATTGCACCATACCAACAGAATACTCTTGGAGTGAGTTTCCAAAAGGTCCACTCAAAGAAGAACAGAAGACACCTGTTCAATTAGAGGATAGCCTCTGCCAGTTGCCATTGCATGGTACACAGCATCACATTCAGATTGATCAATCACAATCAATTGCCTCAATTAATTCCAATCCCTCTATAACAGAAGAAGAGGTTGCTGCCAAATTAGAGACCAAACCTTTGTATGCTGGTTACGAGAGTGATTATGTGAATCCTGTGAGTTCAATAGGATCTGCAGTTGAAGCCTTTCCTAGTCAGTCCAAAAGCCTTATGGTGAGTGATCAATCTTCAGAGCCCACTTTCACCTCGAATTTGAGCTTGAAGACTCAGGGATTCAATCTAGATTGCATTTCTGATCTGGATTTTTACCAAAGGAACCTATTATTGGGTGGTGAGGTAGCTTCTGCACCTTTGGATGAGGACCTGAATTTCTTTTTGCTACAAAGTGAATGCTACAACATGAATTTTGGACTGCAGAATATAGATATGTCAGAGTATTATGATCCAAGGCTTACTGCTGAAGTCCCTAGCCACTTTTATGATTCAGCAGATTATTCATCGGTAGATCAAAGTCTATTCATTGCATGA 1752 0.3973 MDNGCFSSSPRHDAFPAGLRVLVVDDDLTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKEAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFDFEGIHLMRNGSDHSDDGNLFAVEETTSIKKRKDADNKHDDKEFGDHFPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHSDSPSKDLGSFSFLNTANKQQNDIATDSFSYSDGTLLIQMDATSYEGDLKGIVSEPTTEKIRASTSEIPDPKVQKSSQKSLNKPFTSVESSEANHAVFDCTIPTEYSWSEFPKGPLKEEQKTPVQLEDSLCQLPLHGTQHHIQIDQSQSIASINSNPSITEEEVAAKLETKPLYAGYESDYVNPVSSIGSAVEAFPSQSKSLMVSDQSSEPTFTSNLSLKTQGFNLDCISDLDFYQRNLLLGGEVASAPLDEDLNFFLLQSECYNMNFGLQNIDMSEYYDPRLTAEVPSHFYDSADYSSVDQSLFIA* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0840 583 PIRSF RR_ARR_type-B 2 581 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso8g0840 583 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
Gso8g0840 583 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Gso8g0840 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 558 - -
Gso8g0840 583 CDD REC_typeB_ARR-like 21 135 - -
Gso8g0840 583 Gene3D - 19 183 - -
Gso8g0840 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 558 IPR045279 GO:0009736
Gso8g0840 583 SUPERFAMILY CheY-like 18 143 IPR011006 -
Gso8g0840 583 SMART REC_2 19 131 IPR001789 GO:0000160
Gso8g0840 583 SUPERFAMILY Homeodomain-like 201 260 IPR009057 -
Gso8g0840 583 MobiDBLite consensus disorder prediction 337 361 - -
Gso8g0840 583 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Gso8g0840 583 Gene3D - 200 262 - -
Gso8g0840 583 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0840 Gso-Chr8 7799624 7803998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0840 13 269 Response Regulator Gene Family AT2G25180 55.769 1.20e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso8g0840 Response_reg 1.7e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0840 - K14491 gmx:100806394 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1225 5 35759734 35764567 Gso8g0840 8 7799624 7803998 GST
Gso18g0094 18 776405 780892 Gso8g0840 8 7799624 7803998 PCT
Gso13g1527 13 30716949 30721352 Gso8g0840 8 7799624 7803998 PCT
Gso8g0840 8 7799624 7803998 Gso18g0094 18 776405 780892 PCT
Gso8g0840 8 7799624 7803998 Gso13g1527 13 30716949 30721352 PCT