Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0796 ATGGGTCGTGGAAGAATACCTATGGAACTCATTAAGGAGGAGAAAGCCTGTGAAAAAACATTTCACAAGAGAAAAAAGGGGTTATTGAAGAAAGCTTATGAGTTTTCCACCCTTTGTGCAGTTGATGTTGGCGTTATTATCTATGCTCCCAAATATCTTAATGAACCTGAAACATGGCCCCAAGACCAAGACTCAAGAGAGGTAAAACGTGTCATTCAAAAATATCATAACACCACTAGTGATAGGCATCCTAAGGTGTATGATGTGCAAGAGTATTTTAACGATAGAATGAAAAAGATTGAAAGTGAGATTTCCAAAGTGCACAAAGAGGAGATAAAGCTCATGTACCCAACTTGGAATGAGTCTTACAATACTCTTGGAGAGAAACAATTGAGGATGTTTGTTGGTATTCTGGATGCCAAACTTGATGCTTGTAATCAAAGGATGAATATGTTAAAGCAAGATTCAAAGGGAAAAGGAATAGCAAAATCGGACAAAATTGAGACGCTTACTCCCTACATGGCCTCAAATTTAGGTAGTCACCTAAATTTCATGTCTCAAACACAACTTTTCACTCCTAGTGATAACAATCAAGTAGCATTTTACCCATTTCAGCTTAGCCAAAGTTCTCAACCTTCTACGTTTCATGGTGGTCAAAGTTGTGTGCAATTGATGGAGAAAAATGCAATGGTGGATTGGGCTAATCAAGTTGGTGTTGGTGCTAATTGTGATCCCAAAATGGGTGTACTAAAGGAGGATCAATCTAACAAAACTCAAAACTCCTCACCATGCTACTACAATGGAAATATGCAAACAACACAGTCATATATGCAAACTCTTCATTCTCTATTGCAGTACGATGCAACTTTTCAGATCCTATCAAATCAACTAGGACAACCACCAGGGTTTGAACATAACAGTTTTTACGATTCAAATATGTTTCAATCTCAATTTTTTAACTACATGCATGGAAAGAAGTAG 981 0.3731 MGRGRIPMELIKEEKACEKTFHKRKKGLLKKAYEFSTLCAVDVGVIIYAPKYLNEPETWPQDQDSREVKRVIQKYHNTTSDRHPKVYDVQEYFNDRMKKIESEISKVHKEEIKLMYPTWNESYNTLGEKQLRMFVGILDAKLDACNQRMNMLKQDSKGKGIAKSDKIETLTPYMASNLGSHLNFMSQTQLFTPSDNNQVAFYPFQLSQSSQPSTFHGGQSCVQLMEKNAMVDWANQVGVGANCDPKMGVLKEDQSNKTQNSSPCYYNGNMQTTQSYMQTLHSLLQYDATFQILSNQLGQPPGFEHNSFYDSNMFQSQFFNYMHGKK* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0796 326 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Gso8g0796 326 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Gso8g0796 326 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso8g0796 326 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso8g0796 326 CDD MADS_SRF_like 2 76 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso8g0796 326 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Gso8g0796 326 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Gso8g0796 326 PANTHER MADS BOX PROTEIN 3 245 - -
Gso8g0796 326 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 245 - -
Gso8g0796 326 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0796 Gso-Chr8 7315036 7317162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0796 1 215 Type I MADS-box Gene Family AT5G55690 31.556 1.06e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso8g0796 SRF-TF 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0796 - - gmx:102666897 562.762