Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0785 ATGATTGGAAGTAAAGATCGTTCTGCTGACTTTGAAGGTGAGAACTCCAGGAGCAAGCTTTCAAGGCACAATTTTGAGGCCAACAAGGAGTACCCAGATGAAAAAGGTGTTGAATTTCTGAGGGATTCATCAGAAGTGGGTGGTTGTGGTGGCAGCTCAGGGTTGCAAGAGTTGACCCTCAGCTACCTTTGTGACAACCCAAAATTCAATCTTGCTGAGAAAGAGATTCCTGGTAAAAGCTTGTTGGAGAAAATGAGCCACAAAGGTAAAGAGGTTGTGGTATGTGAGAATTCATATCAAGATGGGAAATGGGTGGAAAGAGATTTCCTCAGCCTGAGTGAGCCAAGAGAAGATTCTTCAAAGAGATCCCTTGAGGAAGTTGTTGAGAGAGAGAGTAATAGGGAGAAGAAGCCAAAATTAGAGATTCTCAACCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCCCTCACAGCCTCAAACGCCTTGCAAAACGGTGGTGATCATCAACAACAAGTTAGGACTAATCCTTGCAGGCCATCATCCACTACTCACACTTCATATTCCAATGACTACACTGCAGCTTCTTTGTCTTACTCTTATTCCCACCCTTTCTCTCACAACCCAAGTTGTTCACTCACCCACAATTCAACTGATATGTTTGATTACTCAGTGAGCAAAGATGACCAAATTTGGAACTGTGGAGAGGGAACTAATGGCTCAGTGCATAGTAGGTTCAAGCCAATTAGAGATGGCTTGGTTGGTTTATCCAACCATGGTGGTGGTGGTGGTATTAGTTCCTTTATGCAAGAGTTGCCAGCAAGGCCAAGGTTTGAGGCTCAGTCAGGGGACTCAAGAGGGAGGAATTCTGAGAATCTGAGAGTCTTGGATGATGGGAAGGCAAGGAAGATTTCTAGGCCAGAGAGGATTGTTAGGGAAATTGTTTCAGAGTCTATACCTGTCATGACATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAACTAAGGAATACTTGAGGAATCTCATTGAGAAGCCTGAGAAGAAAGAGGAACTGGTAAGCCTGCAAAGCCGGCTCGAGAGAAGATCTGACCTTACCAAGGAGAGTCTTTCAAAGTGCCATAAGGTGCAATTAGAGGTTTTAGTGGCTGTCAAGATGGGGCTTGCTAGCTTCCTATCTAGTCAGATTCAGTTGTCTGAGATGGTAGAGGTTTTCTTGTTTAAGAGGTGTAGGAATGTAACCTGCAAGCATTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGGAACAAGGGCTTTTGCAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCACATTGGTGCCATGCTACTTGTGGCATTCAGAGGAATCTTATCAAGCCTGGGCCTAGCTTGAAGGGGCCTTCAGGGACCTCGGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCAGAAATGTTTGGTTTCGTTAAGGACGTCTTCATGTGTTGCGCAAAGGATTGGGGGCTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAAGATCTTCATGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGACATGCTATTAAAGCTTCAAACTAGAATGATATCTCCTTCGGATGCCAGCAGTTACATCATGCAATATTTCAGCTATGCGGACAGCATGCCAGACTTTCCTGCTTCTGGTATTTCTTCAAAGGATTTGTCAGCCTCTCAATCTAACCTTACAAAGGATACACCATCTCTTTCAAAACCTAATTCTCTATTACCAAAATATGGTTATGACATGGGCTATTCTAGGTCACATCCTGATGCCATGTCATGTGATCTACTTCAGAAAGACCTCAAAGCTTCCATCTTAAGTGAACTGAAAAATGAGGCTGATTTTCATTTGGGGGCCTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTTCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGGTTCCAGAGGATGATCAGGACGAAGACTGCGCAGATGGAAGAAGAGTACGCCGAAAAGCTTTCCAAACTCTGTTTGCATGAGACCGAGGAAACGCAGAGGAAGAAATTGGATGAACTGAAAGTCTTGGAAAATTCTTATTTTGATTACTATAAGATGAAAAAGAGAATGCAAGATGAGATTGATGGTTTGTTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA 2322 0.4341 MIGSKDRSADFEGENSRSKLSRHNFEANKEYPDEKGVEFLRDSSEVGGCGGSSGLQELTLSYLCDNPKFNLAEKEIPGKSLLEKMSHKGKEVVVCENSYQDGKWVERDFLSLSEPREDSSKRSLEEVVERESNREKKPKLEILNLSLALPDVSLSLTASNALQNGGDHQQQVRTNPCRPSSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTHNSTDMFDYSVSKDDQIWNCGEGTNGSVHSRFKPIRDGLVGLSNHGGGGGISSFMQELPARPRFEAQSGDSRGRNSENLRVLDDGKARKISRPERIVREIVSESIPVMTLTIQELTDDVIASTKEYLRNLIEKPEKKEELVSLQSRLERRSDLTKESLSKCHKVQLEVLVAVKMGLASFLSSQIQLSEMVEVFLFKRCRNVTCKHLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLMKELDCVRKIFMGSEDRKGKELHVKTDDMLLKLQTRMISPSDASSYIMQYFSYADSMPDFPASGISSKDLSASQSNLTKDTPSLSKPNSLLPKYGYDMGYSRSHPDAMSCDLLQKDLKASILSELKNEADFHLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYAEKLSKLCLHETEETQRKKLDELKVLENSYFDYYKMKKRMQDEIDGLLRRMEATKQQWV* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0785 773 CDD PHD_OBE1_like 441 500 - -
Gso8g0785 773 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 773 IPR004082 -
Gso8g0785 773 Coils Coil 675 709 - -
Gso8g0785 773 MobiDBLite consensus disorder prediction 115 134 - -
Gso8g0785 773 Coils Coil 751 771 - -
Gso8g0785 773 Pfam Coiled-coil region of Oberon 633 762 IPR032535 -
Gso8g0785 773 MobiDBLite consensus disorder prediction 1 36 - -
Gso8g0785 773 Pfam PHD - plant homeodomain finger protein 411 535 IPR032881 -
Gso8g0785 773 Coils Coil 723 743 - -
Gso8g0785 773 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 324 346 IPR004082 -
Gso8g0785 773 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 363 378 IPR004082 -
Gso8g0785 773 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 402 423 IPR004082 -
Gso8g0785 773 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Gso8g0785 773 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 521 540 IPR004082 -
Gso8g0785 773 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 669 689 IPR004082 -
Gso8g0785 773 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 708 730 IPR004082 -
Gso8g0785 773 MobiDBLite consensus disorder prediction 163 186 - -
Gso8g0785 773 PANTHER PROTEIN OBERON 3 1 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0785 Gso-Chr8 7202453 7206909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0785 333 508 PHD Gene Family AT5G57380 25.000 8.39e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0785 - - gmx:100791188 1536.93