Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0769 ATGTTAGACAACAACAATTGCAGTGCTTCTAATTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCTGAAAATGGGGTGGCTAACAACAAAAGGAAAAGAAGACCCGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCTCTCTCACCAACCACCTTGCTGGAATCTGACAGATACGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGGAGGCACAAGGTGCCATGGAAGCTGCTAAAGAGGGAAACAGCACAAGGGGGGCATCAGAAGAAGAGGGTGTTTGTGTGCCCTGAGCCAACTTGTTTGCACCATGACCCTTGCCATGCCCTTGGGGACCTTGTGGGAATCAAGAAGCACTTCAGAAGGAAGCACAGCAATCACAAGCAGTGGGTCTGTGACAAGTGTTCCAAAGGGTATGCTGTTCAATCTGATTACAAGGCTCACATCAAAACCTGTGGCACCAGGGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTCCGGCAGCACCGGCCAGAGTTACAAGCACTTCAACCAGCATGCTCTTCAAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATAGCCCCACCATTGCAAGGACTTCCAGTACTGCCAAAACCAGCTGAACAACAACAACAACCAGCAACAACAACAGTCTTATTAACTTCAGAGATACACGGTAACAAGTCCACTACCTCGCATAACTTAGAACTTCAGCTCTTACCCTCCTCAACAAACTCTCAAGCAAAACGAAATACAAAGGAAAACTATGGCTTGAAACTTTCAATAGGCTCATGTAGTAACGACAAAGGGAATAGTAGTGAACCACCAGAGAGAGCATGTTCAGAAGCACATAGGAGCCCACCTGAAAGGAATAATAATAATAATAATAACAATGTGAGTGACTATTCCACGTTGGAAGTGGCAAGGTTGCAGGAGTTTGCAGGAGAGGAACTCAAGTTGGCCATTGCAGAAAAGGCTTATGCAGAAGAGGCTAGAAGAGAGGCCAAACGTCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAACTTTCAAGGGCTGAAGAGCTGAGAAAGCAAGCCATCAAGAAGATAGGTTCCACTGTTATGGAAATAACATGTCATACTTGCAAGCAACAGTTTCAGTCTTCAACTGTTGGGGTGCCATCATCAGAAGAAACCTCCATTGTGATGAGTTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATGA 1356 0.4639 MLDNNNCSASNSGAPSSSDAAFALSENGVANNKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETAQGGHQKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEANFSIAPPLQGLPVLPKPAEQQQQPATTTVLLTSEIHGNKSTTSHNLELQLLPSSTNSQAKRNTKENYGLKLSIGSCSNDKGNSSEPPERACSEAHRSPPERNNNNNNNNVSDYSTLEVARLQEFAGEELKLAIAEKAYAEEARREAKRQIEIAELEFENAKRIRKQAQAELSRAEELRKQAIKKIGSTVMEITCHTCKQQFQSSTVGVPSSEETSIVMSYMSSATTEGEAE* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0769 451 MobiDBLite consensus disorder prediction 1 25 - -
Gso8g0769 451 MobiDBLite consensus disorder prediction 1 48 - -
Gso8g0769 451 Gene3D Classic Zinc Finger 40 109 - -
Gso8g0769 451 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 451 - -
Gso8g0769 451 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
Gso8g0769 451 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Gso8g0769 451 MobiDBLite consensus disorder prediction 259 305 - -
Gso8g0769 451 MobiDBLite consensus disorder prediction 203 224 - -
Gso8g0769 451 Gene3D Classic Zinc Finger 127 204 - -
Gso8g0769 451 PANTHER OS03G0310200 PROTEIN 1 451 IPR039288 GO:0009630
Gso8g0769 451 MobiDBLite consensus disorder prediction 203 246 - -
Gso8g0769 451 SUPERFAMILY beta-beta-alpha zinc fingers 59 85 IPR036236 -
Gso8g0769 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Gso8g0769 451 MobiDBLite consensus disorder prediction 259 331 - -
Gso8g0769 451 MobiDBLite consensus disorder prediction 317 331 - -
Gso8g0769 451 SMART c2h2final6 106 136 IPR013087 -
Gso8g0769 451 SMART c2h2final6 62 84 IPR013087 -
Gso8g0769 451 SMART c2h2final6 142 169 IPR013087 -
Gso8g0769 451 Coils Coil 349 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0769 Gso-Chr8 7044481 7047606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0769 1 451 C2H2 Transcription Factor Family AT2G01940 53.503 1.98e-148 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso8g0769 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0769 K25871 - gmx:100791007 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1165 5 34908213 34911571 Gso8g0769 8 7044481 7047606 GST