Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0694 ATGGAAGGGGGAAACACCAAGAGAAAACAAAAGCGAGAGATCAAGAAAATTGAGGATAAAAAAGATCTTCAAAAAACTCTAGCAAAGAGAAAATGTGGCATTTACAAGAAAGCTAGTGAGTTAACAACTATCTGTGGGGCAAAAGTTGATATGCTTATGTTTACTTCATCTGGAAAATGGTTGAGTTATGGGGAACCTTCTCACCAGGCAAATATCAGGTCTAGCGATGAAGAAAATGACCCTACAAAAGATGATATTAATGAGCCTGTGGAGGATCACGCCAAATCAAAGATTGATGAACTCTGTGAAAAAAATAAGGCACTTATACATCAATTGCACTATGAGGAAGAACGAGAGAATAAACTTGTTGAAATTATGAAGACAAGAAATACACATGGTTGGTGGGAGGCCAAAATTCAAGATCTTAATTGTGAACAAGCTAAGGAATTGGAGGCATCTTTTGTGGAACTCAAAAAGAAATTGGAAAATGAGCTTTCAGTCAAGCAAGGAGACAATGGAAAATCATCTCATGTGGATGAAGTCAATTTATGTCCTACTCACACAAAAGGGAGTAACCTTTCTGAAGTTGTTTTTGGTGCCAACAACGATGCTCGTGGAATTAGTACAAGTGAAAGTATTTTTCCAGATATTTCCTTTAGTCCTATAAATGAAGGGGGTGTTTTCACATTTTATCCATATGGTGAACGTAGGGAAGATCTATTTGATATTGTTTATCCTCCCACAAATCAAGCTCGTGGACACAATTTGTTTGTTAATGATGCAAATGCAAGTAGCAACCATACTCATGTCGCCTCATCTTCAAAAAATTCTCAAGAAAATATTCCACATCTACCTAATGCAATATAA 867 0.3645 MEGGNTKRKQKREIKKIEDKKDLQKTLAKRKCGIYKKASELTTICGAKVDMLMFTSSGKWLSYGEPSHQANIRSSDEENDPTKDDINEPVEDHAKSKIDELCEKNKALIHQLHYEEERENKLVEIMKTRNTHGWWEAKIQDLNCEQAKELEASFVELKKKLENELSVKQGDNGKSSHVDEVNLCPTHTKGSNLSEVVFGANNDARGISTSESIFPDISFSPINEGGVFTFYPYGERREDLFDIVYPPTNQARGHNLFVNDANASSNHTHVASSSKNSQENIPHLPNAI* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0694 288 PANTHER MADS BOX PROTEIN 6 169 - -
Gso8g0694 288 Coils Coil 144 167 - -
Gso8g0694 288 PANTHER AGAMOUS-LIKE 58-RELATED 6 169 - -
Gso8g0694 288 MobiDBLite consensus disorder prediction 264 288 - -
Gso8g0694 288 Coils Coil 7 27 - -
Gso8g0694 288 MobiDBLite consensus disorder prediction 65 88 - -
Gso8g0694 288 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Gso8g0694 288 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Gso8g0694 288 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 62 IPR002100 GO:0003677|GO:0046983
Gso8g0694 288 Gene3D - 19 98 IPR036879 GO:0003677|GO:0046983
Gso8g0694 288 MobiDBLite consensus disorder prediction 71 88 - -
Gso8g0694 288 SUPERFAMILY SRF-like 8 72 IPR036879 GO:0003677|GO:0046983
Gso8g0694 288 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Gso8g0694 288 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Gso8g0694 288 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0694 Gso-Chr8 6370609 6371600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0694 1 170 Type I MADS-box Gene Family AT1G28450 34.831 2.50e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso8g0694 SRF-TF 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0694 - K12412 gsj:114420861 569.696