Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso8g0660 | ATGGTGAAAATCTCACTTGGTGGATACGATGATGGGGAAGGACCCAGCAACCGAACTCATAAGCGGCGCAGGGAAGATGATGATGACGACGACGAAGAAGAGCAACAACAACAACGAAGCTTTGAGATGGTGGACCCTTCAATAGGAACTCAAGAGAACGAAGATCACGCTGCTCCATCCAATGATGGATCGAATTCTAACGGAAATGGGGCTGGAACCAGTACCCGGGATAGGTCCGTTCCTATCTTCGTTTCCGACCCTGATGTCCTTGATTGCTGCATTTGCTATGAACCCTTGACTTCCCCTGTGTTCCAGTGTGAGAATGGACATATTGCTTGCTCTATTTGCTGTGTGAGACTCAGTAACAAGTGTCCCATGTGTTCAATGCCCATTGGGTATAACCGTTGCCGGGCTATTGAGAAGGTCTTGGAGTGTATTAAAATGTCATGCCCGAATGCAAATTATGGCTGCAAAGAGACACTTAGTTACAGCAAGAAAAACGAACATGAGAAGGAATGCATCTATCTGCCATGCTCATGCCCTTTTACTGGTTGTGATTTTGTTGCCTCATCCAAGGAGTTATTCCTCCACTTTAGCCATAGACATGTAGGCTCTGGAACACAGTTTACATATGATAAATTTTTCACTGTCTTCTTAAGTATTAACCAGAGAACAGTTGTTCTTAAAGAGAAAAGTGATGGTAATCTGTTCGTTGTTCACAATAACCTCGAGCATCTGGGGAACATAGTCCGCATTAGCTGCATTGGTCCCAAGTCCACGACAGAGTTTCAGTATGAAGTCTTGGCTAGGCATCAAGGAAACGCTTTGATTCTACAATCTTTTACCAAGATTGTGCAAGGGCAATATACTGATGCTCCATCTAGTACGTTCCTTTTGATTCCGTCTTGTTTGTTTGGCTCTCCACATCTGAAACTGGATATTCGCATAAAGTCACACCATTAA | 963 | 0.4393 | MVKISLGGYDDGEGPSNRTHKRRREDDDDDDEEEQQQQRSFEMVDPSIGTQENEDHAAPSNDGSNSNGNGAGTSTRDRSVPIFVSDPDVLDCCICYEPLTSPVFQCENGHIACSICCVRLSNKCPMCSMPIGYNRCRAIEKVLECIKMSCPNANYGCKETLSYSKKNEHEKECIYLPCSCPFTGCDFVASSKELFLHFSHRHVGSGTQFTYDKFFTVFLSINQRTVVLKEKSDGNLFVVHNNLEHLGNIVRISCIGPKSTTEFQYEVLARHQGNALILQSFTKIVQGQYTDAPSSTFLLIPSCLFGSPHLKLDIRIKSHH* | 321 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso8g0660 | 320 | Pfam | Seven in absentia protein family | 135 | 284 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Gso8g0660 | 320 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 198 | IPR013083 | - | |
Gso8g0660 | 320 | SUPERFAMILY | RING/U-box | 91 | 134 | - | - | |
Gso8g0660 | 320 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Gso8g0660 | 320 | ProSiteProfiles | Zinc finger RING-type profile. | 92 | 128 | IPR001841 | - | |
Gso8g0660 | 320 | SUPERFAMILY | TRAF domain-like | 147 | 317 | - | - | |
Gso8g0660 | 320 | MobiDBLite | consensus disorder prediction | 40 | 79 | - | - | |
Gso8g0660 | 320 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 | 19 | 318 | IPR044286 | - | |
Gso8g0660 | 320 | ProSiteProfiles | Zinc finger SIAH-type profile. | 145 | 203 | IPR013010 | GO:0008270 | |
Gso8g0660 | 320 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 | 19 | 318 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso8g0660 | Gso-Chr8 | 6089431 | 6091637 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso8g0660 | 44 | 186 | C3H Transcription Factor Family | AT2G41980 | 32.168 | 1.40e-20 | 88.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso8g0660 | K04506 | - | gmx:100797881 | 629.402 |