Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0642 ATGGCGTCGTCGAAGGTTGTCTCGACGAATCCGGATCTGCCACGAAACTCTTCTTCGTCGTCGTCTTCTTCATCAACTTCTCCTATATCTCCCCTTTCTTCTCTTCTCTCCGATCTGCACCCAATGGACGACATTCTCAAGTCCATCAGCCCCAAGTCGGTCGACGACGTCTGGAATGACATCGTTACCGGCGCCACCGTCCACGACGCCGTCTCTGCCACCACTACCGACAATGCCGACGCCGCCATGACCCTCGAGGATTTCCTCACCAAGGCCATAAGAGAGGAAGACGTCAGAGGGGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCCTTTCTCCCCTTCCCTGCCGATGGCTCTTCCTCCTCCGTTGAGCCTTTCGCCAATGGCGTTAGTGCCGCGCCGTCGAATTCGGTTCAGAAAGGGAAGAGAAGAGCCGTGGAGGAACCGGTTGACAAGGCAACGCTTCAGAAGCAGAGGAGGATGATCAAGAATAGAGAGTCTGCTGCTAGGTCCAGGGAACGCAAGCAGGCTTACACATCTGAGCTTGAGTATCTGGTTCACCAGCTAGAGCAAGAGAATGTGCAGTTATTAAATGAAGAGCTTTTCGAGTGCATCATTCCAATTGAGGTGATGCCTAAACCGAAGAAAAAACTTCGAAGAGTAAATTCAGCACAATCATTGTGA 690 0.5261 MASSKVVSTNPDLPRNSSSSSSSSSTSPISPLSSLLSDLHPMDDILKSISPKSVDDVWNDIVTGATVHDAVSATTTDNADAAMTLEDFLTKAIREEDVRGAPPPPPPPPPSSFLPFPADGSSSSVEPFANGVSAAPSNSVQKGKRRAVEEPVDKATLQKQRRMIKNRESAARSRERKQAYTSELEYLVHQLEQENVQLLNEELFECIIPIEVMPKPKKKLRRVNSAQSL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0642 229 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 227 IPR043452 GO:0003700|GO:0045893
Gso8g0642 229 MobiDBLite consensus disorder prediction 88 153 - -
Gso8g0642 229 MobiDBLite consensus disorder prediction 1 37 - -
Gso8g0642 229 CDD bZIP_plant_BZIP46 158 203 - -
Gso8g0642 229 MobiDBLite consensus disorder prediction 116 140 - -
Gso8g0642 229 MobiDBLite consensus disorder prediction 99 115 - -
Gso8g0642 229 SMART brlzneu 154 226 IPR004827 GO:0003700|GO:0006355
Gso8g0642 229 Pfam bZIP transcription factor 155 201 IPR004827 GO:0003700|GO:0006355
Gso8g0642 229 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 161 176 IPR004827 GO:0003700|GO:0006355
Gso8g0642 229 Gene3D - 157 206 - -
Gso8g0642 229 SUPERFAMILY Leucine zipper domain 158 201 IPR046347 GO:0003700|GO:0006355
Gso8g0642 229 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 156 201 IPR004827 GO:0003700|GO:0006355
Gso8g0642 229 PANTHER OS05G0437700 PROTEIN 2 227 - -
Gso8g0642 229 Coils Coil 181 201 - -
Gso8g0642 229 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0642 Gso-Chr8 5919082 5922769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0642 52 227 bZIP Transcription Factor Family AT5G44080 39.130 1.02e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso8g0642 bZIP_1 2e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0642 K14432 - gmx:100101890 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1044 5 33495872 33499832 Gso8g0642 8 5919082 5922769 GST