Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0635 ATGGTAGGAAGTGTTGATGTTCTAGCTCATGATTCCAGCATTAATGGAACAATGAAACAGTGGCCTGAAGATTTCAATTCCATGACGATTATGAGAGATCATGTGACACTCACAATTGGAGAGAATGGCATTGGCAATGGGGTTGTTCAGAATGGTACAGAAAATGGAGAAAGAAAGATAGTGCTTGGAAGAAATATTCACACCACGTGCCTTGAAGTCACTGAGCCTGATATAGATGATGAGGTTACTGGGGAAAGGGAAGCTTATATGGCAGGCGTGTTGGCTAAATACAAAAAATCTCTGACTGAAAGGACCAACTATCATTTAGGATACCCCTATAATTTGAATTTTGACTATGATGCACTCTCTCAGCTTCAGCATTTTTCCATCAACAACCTGGGGGATCCCTTCATTGAAAGCAATTATGGTGTCCACTCTAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTCGCGCGGTTGTGGGAACTCGAGAAAGATGAGTATTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTCCATGGCATCCTAGTGGGGAGAGAGGTTTTCCCTGATGGGATTTTATATGCCTCACAGGAATCACATTATTCTGTTTTCAAAGCTGCTAGAATGTACAGAATGGAATGTGTGAAGATTAACACTCTTTGGTCTGGTGAGATTGATTGTGATGATTTTAAGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGCAATTGTGAATGTGAACATAGGTACAACTGTGAAGGGAGCAGTGGATGATCTTGATCTGGTAATAAAGAAACTAGAAGAGGCAGGATTTTCACAAGACAGGTTCTATATCCATTGTGATGGGGCTTTGTTTGGTCTCATGCTGCCTTTTGTCAAACGTGCTCCAAAAATTTCATTCAAGAAACCAATTGGTAGTGTGAGTGTCTCAGGCCACAAATTCGTGGGGTGCCCCATGCCCTGTGGCGTGCAGATAACACGGTTGGAGCACGTCAACGCTCTTTCCAGAAACGTCGAATACCTGGCTTCAAGGGACGCCACAATCATGGGAAGCAGGAACGGGCACGCCCCCATATTCCTCTGGTACAGCCTCAACATGAAAGGCTACAGAGGCTTCCAGAAAGAGGTGCAAAAGTGTTTGAGGAATGCACACTACTTCAAAGATCGCCTTGTGGATGCTGGCATTGGAGCGATGCTGAATGAGCTCAGCAGCACCGTTGTGTTTGAGAGGCCTCACGATGAAGGGTTTGTGCACAAGTGGCAGCTTGCGTGCCAAGGAAACGTTGCACATGTTGTGGTGATGCCTAATGTCACCATTGAGAAACTTGATGATTTTCTCAATGAGCTTGTGCAGAAGCGTGCTGTGTGGTTTAGAGATGGGAACTGTCAACCCTATTGTATAGCTTCTGATGTAGGACAGGAAAATTGCCTCTGTGCTCTGCACAGGTAA 1458 0.4492 MVGSVDVLAHDSSINGTMKQWPEDFNSMTIMRDHVTLTIGENGIGNGVVQNGTENGERKIVLGRNIHTTCLEVTEPDIDDEVTGEREAYMAGVLAKYKKSLTERTNYHLGYPYNLNFDYDALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMECVKINTLWSGEIDCDDFKAKLLCHKDKPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGFSQDRFYIHCDGALFGLMLPFVKRAPKISFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHVNALSRNVEYLASRDATIMGSRNGHAPIFLWYSLNMKGYRGFQKEVQKCLRNAHYFKDRLVDAGIGAMLNELSSTVVFERPHDEGFVHKWQLACQGNVAHVVVMPNVTIEKLDDFLNELVQKRAVWFRDGNCQPYCIASDVGQENCLCALHR* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0635 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 195 404 IPR002129 GO:0016830|GO:0019752|GO:0030170
Gso8g0635 485 Gene3D - 142 356 IPR015421 GO:0003824
Gso8g0635 485 PANTHER - 1 485 - -
Gso8g0635 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 309 330 IPR021115 GO:0016831
Gso8g0635 485 Gene3D Aspartate Aminotransferase, domain 1 361 456 IPR015422 GO:0003824
Gso8g0635 485 PANTHER SERINE DECARBOXYLASE 1 485 - -
Gso8g0635 485 SUPERFAMILY PLP-dependent transferases 101 454 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0635 Gso-Chr8 5860894 5864145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0635 208 391 Calmodulin-binding Proteins AT1G65960 26.425 8.32e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0635 K25193 - gmx:100792053 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0635 8 5860894 5864145 Gso15g0435 15 3977004 3981226 PCT
Gso8g0635 8 5860894 5864145 Gso8g1506 8 14673477 14677851 PCT
Gso15g0435 15 3977004 3981226 Gso8g0635 8 5860894 5864145 PCT
Gso8g1506 8 14673477 14677851 Gso8g0635 8 5860894 5864145 PCT