Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0629 ATGTCTGACGTGGAAGAGTATCGTTGTTTCATTGGTGGCCTTGCGTGGTCAACATCTGATAGAAAGTTAAAGGATACGTTTGAAAAGTTTGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAGTTCTCTGGGCGTTCTCGTGGTTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGACGAGGCTATTGATGCTATGAATGGGATGGATTTAGACGGGCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAACTAGAGGTGATGGTGATCGCTACCGGGATCGTGGTCGTGATCGTGACCGAGATCATGGAGGTGGAGGTGGCCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGTCCAGGGGAGGAAAGTATGGTGGTAGGGAAAGTAGATATGGTGGAAGCAGTGGTGGTGGTTATGGACCAGATAGAGCAGATCGTTCTTCAGGGGGGCGCAGCAGGGATGGTGGTAGTCATGGAGATTCTGGAAGTGATCGATTTTATCGTGATCGTTCAGGACCATATGAGCGAGAGCGACGGGGATCAGGAGGCTTTCGTTGA 618 0.4838 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDLDGRTITVDRAQPQQGSTRGDGDRYRDRGRDRDRDHGGGGGRGSNGGECFKCGKPGHFARECPSEGSRGGKYGGRESRYGGSSGGGYGPDRADRSSGGRSRDGGSHGDSGSDRFYRDRSGPYERERRGSGGFR* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0629 205 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Gso8g0629 205 Pfam Zinc knuckle 120 136 IPR001878 GO:0003676|GO:0008270
Gso8g0629 205 MobiDBLite consensus disorder prediction 76 205 - -
Gso8g0629 205 Gene3D - 117 173 - -
Gso8g0629 205 MobiDBLite consensus disorder prediction 92 111 - -
Gso8g0629 205 PANTHER TRANSFORMER-2-RELATED 1 162 - -
Gso8g0629 205 Gene3D - 2 116 IPR012677 -
Gso8g0629 205 ProSiteProfiles Zinc finger CCHC-type profile. 121 136 IPR001878 GO:0003676|GO:0008270
Gso8g0629 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Gso8g0629 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Gso8g0629 205 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 162 - -
Gso8g0629 205 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Gso8g0629 205 SMART rrm1_1 8 81 IPR000504 GO:0003723
Gso8g0629 205 SUPERFAMILY Retrovirus zinc finger-like domains 103 141 IPR036875 GO:0003676|GO:0008270
Gso8g0629 205 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0629 Gso-Chr8 5826293 5830447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0629 10 89 Eukaryotic Initiation Factors Gene Family AT1G71770 36.782 4.86e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0629 - - gsj:114421428 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1032 5 33281144 33283583 Gso8g0629 8 5826293 5830447 GST