Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0625 ATGGGAGATAACAATGTCAACCTCCCACCCGGGTTTCGCTTCTACCCCACAGATGAAGAGCTTGTTGTTCATTTCCTTCAAAGAAAGGCAAATCTTCTTCCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCTTATGATCCTTGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTAGCAATGGCTATTGGATGCCAATGGGAATGGAAGAGCCAGTGATTTCAAACTCTAGCAACAAGAGAGTTGGCATGAAGAAATATTATGTGTTCCATTTGGGAGAAGCCCCTGATGGCAACACAACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGCTTCCTCTAGCATATCATCCAGAAGAAGATCACAACCTAAACCGGACCATAGTAAATGGGTGATATGTCGAGTTTATGAACGGGATAACGATGAAGATGATGGTGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGACGAAATAAGTTTGCCAAATTAG 573 0.4258 MGDNNVNLPPGFRFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRTQNRVTSNGYWMPMGMEEPVISNSSNKRVGMKKYYVFHLGEAPDGNTTNWIMQEYRLLDSASSSISSRRRSQPKPDHSKWVICRVYERDNDEDDGDGTELSCLDEVFLSLDDLDEISLPN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0625 190 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Gso8g0625 190 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 187 - -
Gso8g0625 190 PANTHER NAC TRANSCRIPTION FACTOR 56 5 187 - -
Gso8g0625 190 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Gso8g0625 190 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Gso8g0625 190 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0625 Gso-Chr8 5796246 5797980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0625 1 162 NAC Transcription Factor Family AT1G61110 39.227 2.28e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso8g0625 NAM 5.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0625 - - gmx:100788893 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1026 5 33240124 33241994 Gso8g0625 8 5796246 5797980 GST
Gso8g0625 8 5796246 5797980 Gso15g0440 15 4015585 4017128 PCT
Gso8g0625 8 5796246 5797980 Gso8g1501 8 14632028 14633595 PCT
Gso15g0440 15 4015585 4017128 Gso8g0625 8 5796246 5797980 PCT
Gso8g1501 8 14632028 14633595 Gso8g0625 8 5796246 5797980 PCT