Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0613 ATGGCAGCTGCAACATCTAGTGCTGTGTTAAACGGGTTTGGATCTCACTTCTTGTGTGGAGGAAAGAGGAGCCATGCCCTTCTTGCTGCTAGCATTGGAGGGAAAGTTGGTGCTTCTGTTAGTCCTAAAAGAGTTATTGTGGCAGTTGCTGCTGCACCAAAGAAGTCATGGATCCCCGCTGTAAAAGGTGGTGGGAGTTTCATAGACCCAGAATGGCTTGATGGCTCGCTACCAGGTGACTATGGTTTTGACCCACTAGGACTAGGAAAGGACCCGGCATTCCTGAAATGGTATAGAGAAGCTGAACTCATTCATGGGAGGTGGGCAATGGCTGCAGTTGTAGGCATCTTCATTGGGCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGATCCTAATGCAATTGCTCCTTTCTCATTTGGCTCTCTCTTAGGTACCCAGTTGCTCCTAATGGGGTGGGTTGAGAGCAAGAGATGGGTGGACTTCTTCAACCCAGATTCTCAGTCAGTGGAGTGGGCCACTCCATGGTCAAAAACTGCTGAGAACTTTGGCAACTCTACTGGTGAACAAGGCTACCCTGGAGGAAAATTCTTTGACCCTTTGGGATTCGCTGGAGCTATCAAGGATGGCGTTTACATTCCGGATGCCGACAAGCTAGAGAGACTGAAATTGGCTGAGATTAAGCATGCTAGGATTGCTATGTTGGCTATGCTGATTTTCTACTTTGAGGCTGGCCAGGGCAAGACACCCCTTGGTGCTCTTGGCTTGTAA 777 0.4929 MAAATSSAVLNGFGSHFLCGGKRSHALLAASIGGKVGASVSPKRVIVAVAAAPKKSWIPAVKGGGSFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFGNSTGEQGYPGGKFFDPLGFAGAIKDGVYIPDADKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0613 258 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 258 IPR001344 GO:0009765|GO:0016020
Gso8g0613 258 Pfam Chlorophyll A-B binding protein 70 246 IPR022796 -
Gso8g0613 258 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 3 258 - -
Gso8g0613 258 SUPERFAMILY Chlorophyll a-b binding protein 66 258 - -
Gso8g0613 258 Gene3D Chlorophyll a/b binding protein domain 70 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0613 Gso-Chr8 5689546 5690876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0613 1 258 Chloroplast and Mitochondria Gene Families AT1G15820 81.923 1.47e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0613 K08917 - gmx:100783223 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0613 8 5689546 5690876 Gso15g0450 15 4129214 4130634 PCT
Gso8g0613 8 5689546 5690876 Gso8g1492 8 14513294 14515151 PCT
Gso15g0450 15 4129214 4130634 Gso8g0613 8 5689546 5690876 PCT
Gso8g1492 8 14513294 14515151 Gso8g0613 8 5689546 5690876 PCT