Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0588 ATGAGCTCTATACTTCAACCTAATGCTAGTGATTGTGAATCAAACAATAGCTCAAAAATTCTGCCACCCCTTTTAGAATTTGATACCTCATTTGAGGTAGAATTAGAAAGGATCAAATCAGTAGAAACTGGTAAAGATGGTGAGGAAGATCAAGAGGAGGGTGTTTTCTTGACGTGGGAGGACTTGTGGGTGACAGTTTCAAATGGAAAAAATGGAAGGAAACCAATACTTCAGGGTCTAAAAGGCTATGCCAAACCAGGGAAACTCTTGGCCATAATGGGTCCCTCTGGCTGTGGCAAGTCAACACTTCTTGATGCTTTAGCAGGAAGGTTAGGTTCAAAGACAAAGCAAACAGGGAAGATCCTAATCAATGGCAGGAAACAAGCATTAGCTTATGGAGCATCTGCATATGTAACAGAAGATGATACTATTTTGACAACTCTAACGGTTAAAGAAGCAGTATACTACTCAGCTAACCTTCAATTGCCAGATTCCATGTCAAAGTCAGAAAAACAGGAGAGAGCAGATTTCACAATCAGAGAAATGGGTCTGCAAGATGCCATTAACACCAGAATTGGAGGGTGGGGATCTAAAGGCGCTAGTGGCGGGCAAAAGAGGAGAGTTAGCATTTGCATTGAGATCTTAACACATCCCAGGCTTCTCTTCCTTGATGAACCCACTAGTGGACTTGATAGTGCAGCTTCTTATCATGTGATGAGTAGAATATCCAACTTGAACAAAAAGGATGGCATTCAAAGGACTATTATTGCATCAATCCATCAGCCAAGTAATGAAATTTTTAAACTTTTTCCCAACCTTTGCCTTCTCTCTTCTGGGAAAACAGTTTACTTTGGACCTACTTCTGCTGCAAACAAGTTTTTCTCATCAAATGGTTTTCCATGCTCAAGTCTTCATAGTCCTTCTGATCACTTCGTAAAAACCATTAACAAGGATTTTGAACGGGACCCAGAGAAAGGATTAGCTGGAGGGCTAAGCACAGAAGAAGCAATTCATGTTCTTGCAAAATCATATGATTCATCTGAGATTTGTCACCAAGTTCAAAATGAAATAGCCCAAATAAAGAAAAGGGACTCGGACGCAATGGATAAGAAATGCCATGCTGACTTTTCAACTCAATGCCTCATTCTTACAAGAAGATCTTTTCTGAACATGTACCGCGAAGTAGGCTATTACTGGTTACGCCTACTCATCTATGGTGCCTTGGCATTAAGTCTTGGTACCTTGTTCTTTGACATTGGTTCAAGCAGTGAATCAATTCAGGCCAGAGGTTCACTGCTTGTGTTTGTTGTTACATTCCTGACCTTCATAACTGTTGGAGGTTTCCCTTCTTTTGTGGAGGAAATGAAGGTGTTTGAAAGAGAAAGACTAAATGGGCATTATGGTGTCACTGCATTTACCATTGGAAACACATTATCTTCTGTTCCATTTTTGCTGTTGATGTCATTGATCCCAGGAGCACTGGTTTATTACCTAGTTGGACTTCACCAAGGACATGAACATTTTGTGTACTTTATATTTATGCTTTTCACTTCCCTCTTCTTGGTTGAGGGTCTCATGATGATTGTTGCAAGCATGGTTCCCAATTTCTTGATGGGTATAATCGTTGGTTCGGGAATTTTGGGCATAATGATGTTAGATGGTGGGTTCTATAGGCTTCCAAGTGACATTCCTAAGCCATTTTGGAGATACCCTTTGCACTACATTTCCTTCCACAAGTATGCCTACCAAGGATTGTTCAAGAATGAATTTCAAGGTCTAACATTCCCTAGCAATCAAGTTGGAGCACACATGACAATTAGTGGTGAACATATTCTGAGACACATATGGCAAATGGAAGTTAATTATTCAAAGTGGGTGGATGTTGGTATCTTGGTAGGAATGGCAGTTCTATATCGAATTCTATTTATGGTTATCATCAAGAGCTTTGAGAAGTTGAAGTCTGTTGCTACAGCAATTAATTGTCCCCAAGCAAACTTTGGGTTCACCAAAGTGACAAGGAGCAGTGAAATTGATTAG 2037 0.4016 MSSILQPNASDCESNNSSKILPPLLEFDTSFEVELERIKSVETGKDGEEDQEEGVFLTWEDLWVTVSNGKNGRKPILQGLKGYAKPGKLLAIMGPSGCGKSTLLDALAGRLGSKTKQTGKILINGRKQALAYGASAYVTEDDTILTTLTVKEAVYYSANLQLPDSMSKSEKQERADFTIREMGLQDAINTRIGGWGSKGASGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVMSRISNLNKKDGIQRTIIASIHQPSNEIFKLFPNLCLLSSGKTVYFGPTSAANKFFSSNGFPCSSLHSPSDHFVKTINKDFERDPEKGLAGGLSTEEAIHVLAKSYDSSEICHQVQNEIAQIKKRDSDAMDKKCHADFSTQCLILTRRSFLNMYREVGYYWLRLLIYGALALSLGTLFFDIGSSSESIQARGSLLVFVVTFLTFITVGGFPSFVEEMKVFERERLNGHYGVTAFTIGNTLSSVPFLLLMSLIPGALVYYLVGLHQGHEHFVYFIFMLFTSLFLVEGLMMIVASMVPNFLMGIIVGSGILGIMMLDGGFYRLPSDIPKPFWRYPLHYISFHKYAYQGLFKNEFQGLTFPSNQVGAHMTISGEHILRHIWQMEVNYSKWVDVGILVGMAVLYRILFMVIIKSFEKLKSVATAINCPQANFGFTKVTRSSEID* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0588 678 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 46 670 - -
Gso8g0588 678 PANTHER XENOBIOTIC-TRANSPORTING ATPASE-RELATED 46 670 - -
Gso8g0588 678 Pfam ABC-2 type transporter 260 359 IPR043926 GO:0140359
Gso8g0588 678 SMART AAA_5 86 279 IPR003593 -
Gso8g0588 678 Pfam ABC-2 type transporter 378 590 IPR013525 GO:0016020|GO:0140359
Gso8g0588 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 292 IPR027417 -
Gso8g0588 678 Pfam ABC transporter 79 228 IPR003439 GO:0005524
Gso8g0588 678 Gene3D - 43 297 IPR027417 -
Gso8g0588 678 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 57 303 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0588 Gso-Chr8 5427370 5431534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0588 87 344 Calmodulin-binding Proteins AT2G36910 26.621 1.80e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0588 K05681 - gmx:100792958 1335.09