Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0582 ATGGGTCTGAACTACAGAAATTTGTTCCCAGGAACACCATCAAACTGTCTACAAGACTGTTCTTATGATGATAAATCATCATGTTGTGATCCTTCTAATTTGCTCCCTCCAACTCCTCCTATCTACTCAGATAATGATTTGAGCCAAAGTCCCAGCAAACACATCAAAGCTGAATACTTGATCATAAGTTTCTCCATTGTTGCAACCGCTTTCATTGCCCTCTTCTGCTACGCCATCTACGTCAAGTTCTTCTCCCCTCGGAACACCTCAATTATCAGAAGAAGAAGAAGAACAACAACAACAACCTTGTCACAGCCACAAACAGAACAATATTTCTTGGACGAGGAAGAACATGGTCCTGTCGTTGACCATCCCATCTGGTACATCCGCACCACCGGTCTCCAACAAGCAGTCATCACCGCCATCACCGTCTGCAAGTACAAAAAAGACGAAGGCTTGATCGAAGGTACAGAATGTTCAGTTTGCCTCAGCGAGTTTCAAGAGGACGAAAGTCTCAGGCTTTTACCAAAGTGTAACCACGCTTTTCACTTACCTTGCATTGACACGTGGCTTAGATCTCACACCAATTGCCCCATGTGTCGTGCTCCTATTGTCACTGACCCAACAAGGGTTCCTTCTTCCATGGACCCTACTGCGTTTGAAACAAGTTCTTTTGTGGAAGAGATTTTTGAAAATAGTGCGGAGAATACTCAAAATAGTAGTGATGATTTGTTGAGGGGTGAGGAAGAGGAAAGAGTGCAAGAAGATGAAGCGTGTGAAGAGAACTTGGCTTCTGAAGTTGTGGTGACTGTGCAGCAGCCGAGAAGATCGGTGTCTCTGGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCTACTGTTGTGTCAGGGGAATCTCACGGGGATCATTCAAAGAGGGTTGGTGGGAATGGGAATTTGGCTACTAAAGGTGGTTCTAGTTCTTGTTCTTCGACTAGTTCAGTGAAAAGGTCGCTATCATTCAATGCCAAACACTTACTATCATGGTATAGCCGAAGTCAGAGAAAGCCAAATGCTCCTTTGAGAAGCTTCTGA 1077 0.4448 MGLNYRNLFPGTPSNCLQDCSYDDKSSCCDPSNLLPPTPPIYSDNDLSQSPSKHIKAEYLIISFSIVATAFIALFCYAIYVKFFSPRNTSIIRRRRRTTTTTLSQPQTEQYFLDEEEHGPVVDHPIWYIRTTGLQQAVITAITVCKYKKDEGLIEGTECSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSSMDPTAFETSSFVEEIFENSAENTQNSSDDLLRGEEEERVQEDEACEENLASEVVVTVQQPRRSVSLDSSSAAKISLALATVVSGESHGDHSKRVGGNGNLATKGGSSSCSSTSSVKRSLSFNAKHLLSWYSRSQRKPNAPLRSF* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0582 358 MobiDBLite consensus disorder prediction 314 328 - -
Gso8g0582 358 MobiDBLite consensus disorder prediction 231 252 - -
Gso8g0582 358 Pfam Ring finger domain 158 201 IPR001841 -
Gso8g0582 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
Gso8g0582 358 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 345 IPR044675 -
Gso8g0582 358 PANTHER RING-H2 FINGER PROTEIN ATL54 13 345 - -
Gso8g0582 358 CDD RING-H2_EL5_like 158 201 - -
Gso8g0582 358 SUPERFAMILY RING/U-box 150 211 - -
Gso8g0582 358 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Gso8g0582 358 MobiDBLite consensus disorder prediction 299 328 - -
Gso8g0582 358 SMART ring_2 159 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0582 Gso-Chr8 5362696 5364359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0582 51 256 C3H Transcription Factor Family AT1G72220 44.550 2.94e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0582 - - gmx:100819010 661.373