Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0570 ATGGAGATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCCAGGCAAGTGACTTTCTCCAAGAGAAGGAAAGGGCTTTTCAAGAAGGCTCAGGAATTGTCAACCCTTTGTGATGCAGACATAGCTCTCATTGTTTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCCAGTTCAAGTATGCATCAAGTAATTGAAAGGCGCGATAGCCATTCAGCAATGAATAGACTGGATCGCCCCTCAATTGAGCTGCAGATTGAGAATGACTCCAATGAAATCCTGCGCAAGAAAGTAGAAGATAAGAACCGTGAGCTGAGGCAGATGAATGGGGAAGATCTGCAAGGATTGACATTACAAGAACTGCATAAACTAGAGGAACACCTTAAAAGAGGTTTGATCAATGTTTCAAAAGTAAAGGATGAAAAACTTATGCAAGAGATCAGCACGCTTAAGAGAAAGGGAGTGGAACTAATGGAGGAAAACCAAAGACTGAAACAGGTACCGAGCCTTATCCATGTACATAGGCAATCATCGGAATCCATTCTTAGCAATTCATCTAACCTTCCTGAAGATGGTGGTAGCGACACATCTCTCAAGTTGGGGTTACCTTAA 621 0.4187 MEMTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMHQVIERRDSHSAMNRLDRPSIELQIENDSNEILRKKVEDKNRELRQMNGEDLQGLTLQELHKLEEHLKRGLINVSKVKDEKLMQEISTLKRKGVELMEENQRLKQVPSLIHVHRQSSESILSNSSNLPEDGGSDTSLKLGLP* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0570 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677|GO:0046983
Gso8g0570 206 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Gso8g0570 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 190 - -
Gso8g0570 206 Coils Coil 150 170 - -
Gso8g0570 206 Pfam K-box region 95 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso8g0570 206 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Gso8g0570 206 Coils Coil 87 114 - -
Gso8g0570 206 CDD MADS_MEF2_like 5 76 IPR033896 GO:0000977|GO:0045944
Gso8g0570 206 PANTHER - 2 190 - -
Gso8g0570 206 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso8g0570 206 Gene3D - 15 83 IPR036879 GO:0003677|GO:0046983
Gso8g0570 206 MobiDBLite consensus disorder prediction 179 196 - -
Gso8g0570 206 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Gso8g0570 206 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Gso8g0570 206 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Gso8g0570 206 MobiDBLite consensus disorder prediction 179 206 - -
Gso8g0570 206 ProSitePatterns MADS-box domain signature. 5 59 IPR002100 GO:0003677|GO:0046983
Gso8g0570 206 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0570 Gso-Chr8 5251260 5261703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0570 3 206 MADS-box Gene Family AT2G22540 49.367 1.43e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso8g0570 K-box 6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0570 - - gmx:100815814 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0570 8 5251260 5261703 Gso15g0496 15 4467796 4474805 PCT
Gso8g0570 8 5251260 5261703 Gso11g2811 11 43832954 43840243 PCT
Gso15g0496 15 4467796 4474805 Gso8g0570 8 5251260 5261703 PCT
Gso11g2811 11 43832954 43840243 Gso8g0570 8 5251260 5261703 PCT