Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0561 ATGGATAACAGCACCCTGAACAATCCCGGCGACAACGCCGAAGACCCGCCACCGCCGCCGGCTCCCATGCAAGTCTTTGATTCCTTCCAACCGTTCCATTACGCCAACGGTTCCGATGAAGGAGAAGAAGCTGTTCCTGCTCCAGTCGCCAATGCTTCTTCTGCTATGCGCGCCAGAGCTAGCGAACTCACCATTTCCTTCGAAGGCGAAGTCTATGTTTTCCCAGCCGTTACGCCCGAAAAGGTGCAGGCTGTATTATTACTCTTGGGAGCACAGGAGATGCCAAATAGTGCCCCCACCTCTGACTTTTTGTTGCAGCAAAACTATCAGGACATTCGGGAAATAAATGATCCTTCCCGAAGTTCAAAGCTTTCAAGAAGATTTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAGGAGAGATGTTTTGAGAAGAAAATTCGGTACTCTTGCCGTAAAGAGGTTGCTCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAAGACTACAAATCTCCTGCTGAAAATTGGGATTCAAGCAATGGTACTCCTTGCCCAGACTCTACTGAGCGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCAGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAAGCCAAACATTCTTATGCTAAGCAGGGCAAGGAGGGAAGCCCTGAAGAAACTAAGCCTGTGCAAATGGATTCCAGACGGTCACCTGAGAAGACAAATGAGCAGTTTATTATTGGAACTGCTGAATCAGTTACTAACAACTTGTCCGTCCGATTGGAGAATCATGCTCTTATTCTACATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCCGGGACCGAATTTGAGATTCCTGCAGGTTTTGATGATCAGGTTGACATTGATGATGCCAATATGAGGACTTATTGGCTGTGA 1077 0.467 MDNSTLNNPGDNAEDPPPPPAPMQVFDSFQPFHYANGSDEGEEAVPAPVANASSAMRARASELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMPNSAPTSDFLLQQNYQDIREINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYKSPAENWDSSNGTPCPDSTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIAFEQNELDTSADIKPSTTEAKHSYAKQGKEGSPEETKPVQMDSRRSPEKTNEQFIIGTAESVTNNLSVRLENHALILHEQDTLEDLADASGTEFEIPAGFDDQVDIDDANMRTYWL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0561 358 MobiDBLite consensus disorder prediction 265 291 - -
Gso8g0561 358 Gene3D - 189 248 IPR013088 GO:0006355|GO:0008270
Gso8g0561 358 ProSiteProfiles CCT domain profile. 127 169 IPR010402 GO:0005515
Gso8g0561 358 CDD ZnF_GATA 195 238 IPR000679 GO:0006355|GO:0043565
Gso8g0561 358 ProSiteProfiles GATA-type zinc finger domain profile. 190 247 IPR000679 GO:0006355|GO:0043565
Gso8g0561 358 MobiDBLite consensus disorder prediction 253 293 - -
Gso8g0561 358 Pfam GATA zinc finger 196 232 IPR000679 GO:0006355|GO:0043565
Gso8g0561 358 SMART tify_2 56 91 IPR010399 -
Gso8g0561 358 ProSiteProfiles Tify domain profile. 56 91 IPR010399 -
Gso8g0561 358 Pfam tify domain 60 90 IPR010399 -
Gso8g0561 358 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 50 349 - -
Gso8g0561 358 MobiDBLite consensus disorder prediction 175 194 - -
Gso8g0561 358 ProSitePatterns GATA-type zinc finger domain. 196 223 IPR000679 GO:0006355|GO:0043565
Gso8g0561 358 MobiDBLite consensus disorder prediction 1 44 - -
Gso8g0561 358 Pfam CCT motif 127 168 IPR010402 GO:0005515
Gso8g0561 358 PANTHER GATA TRANSCRIPTION FACTOR 28 50 349 IPR045280 GO:0006355
Gso8g0561 358 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 244 - -
Gso8g0561 358 SMART GATA_3 190 243 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0561 Gso-Chr8 5192537 5197946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0561 35 239 Tify Gene Family AT1G51600 53.394 3.85e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso8g0561 CCT 6.7e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0561 - - gmx:100785549 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1549 7 37266836 37272823 Gso8g0561 8 5192537 5197946 GST