Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0556 ATGTCTTCTCTCTGGTTCCTTAAACTGTCCCTCAAATGCCTTGATCACCTCGCATGGCCTCTTCTTGCTTTGGGGTATCCTCTATGTGCTTCCGTACAAGCAATTGAGACTGATTCCAATAAAGAAACTAGGGATTTGATCTCGTATTGGATACTTCTCTCGTTAATATACCTCTTTGAGTATGCATTTTCGAGGATTCTTCAATGGTTCCAGTTTTGGCCTTACATTAAGCTTATGATCATCTTCTGCCTTGTCACGCCAGACTTTGGACGAGCTTCTTATGCCTATAATAACCTTATCCGCACTTGCATCTCCTTAAATCCACAAGCAATCATATGTAGGTTAAATAACTGGAGGAAGTTTTTTGTCAAGAAAGATGACTTTTTACTGCATGTAGAGAGATATCTAAACGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACCAACCTATTGAAGAACACAACTTATAAACCTGATGCAGAAGCAACAAATGCAATTATAGCAACTGATAATAATGAAACGCAACAGACAAATGAGACAAAACTCCAAACACAGCAAAAAACCATCAAAGATTTGGAGGTGATTGAGAAAAAAGAAATTCTTGCAGGCAAGCAAGATATTTCTGTTGTGCCTAACCTTGTGCCAAGTCAGAATGCTTCACCAGCCATGGTGGAAACTAAAATATTAGTGGGGAAAGACACAGCTAGTGGAGAGCTTCCCGAGAGTTCTACACATAAGGAAGTGCAGAAAGAGTGGACATGCGCTTTATGTCATGTAACGACATCTAGCGAGAAAACCTTGATTGACCACCTTCATGGGAGGAAACACAAGGCAACTTGTGAATCTCTGAAAGCACAAAATCAACCTGTGCCACATAAGGTGAAAAGTGATCAGTCCAAAGATGATTTGAAGCAAAAGAACGTTATCTATCAGATAAATTCCAAGACCAAGAGTGGAGAGAAGGTAGGAAAAGAAGCCATGGACCATAAGGTGCAGAAACTGCAAAAGAAACTATATGAACCTGCTGGGACGAGTAATTCCAAATTTCTGTGTGAAGTCTGTAATGTCTATTGCCCTTGCGAGATTGCTTTGGCCTCACACAAAAATGGGAAGAAGCATTTGGCTAAAATTAAAACTTCAATCTGA 1161 0.3997 MSSLWFLKLSLKCLDHLAWPLLALGYPLCASVQAIETDSNKETRDLISYWILLSLIYLFEYAFSRILQWFQFWPYIKLMIIFCLVTPDFGRASYAYNNLIRTCISLNPQAIICRLNNWRKFFVKKDDFLLHVERYLNENGTEALEKLIASKNTNLLKNTTYKPDAEATNAIIATDNNETQQTNETKLQTQQKTIKDLEVIEKKEILAGKQDISVVPNLVPSQNASPAMVETKILVGKDTASGELPESSTHKEVQKEWTCALCHVTTSSEKTLIDHLHGRKHKATCESLKAQNQPVPHKVKSDQSKDDLKQKNVIYQINSKTKSGEKVGKEAMDHKVQKLQKKLYEPAGTSNSKFLCEVCNVYCPCEIALASHKNGKKHLAKIKTSI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0556 386 SUPERFAMILY beta-beta-alpha zinc fingers 247 292 IPR036236 -
Gso8g0556 386 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 318 - -
Gso8g0556 386 SMART c2h2final6 257 281 IPR013087 -
Gso8g0556 386 SMART c2h2final6 354 378 IPR013087 -
Gso8g0556 386 SUPERFAMILY beta-beta-alpha zinc fingers 346 383 IPR036236 -
Gso8g0556 386 PANTHER HVA22-LIKE PROTEINS 1 318 IPR004345 -
Gso8g0556 386 SMART ZnF_U1_5 351 385 IPR003604 GO:0003676|GO:0008270
Gso8g0556 386 SMART ZnF_U1_5 254 288 IPR003604 GO:0003676|GO:0008270
Gso8g0556 386 Pfam Zinc-finger of C2H2 type 356 378 - -
Gso8g0556 386 Pfam Zinc-finger of C2H2 type 257 281 - -
Gso8g0556 386 Gene3D Classic Zinc Finger 331 385 - -
Gso8g0556 386 Gene3D Classic Zinc Finger 238 287 - -
Gso8g0556 386 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0556 Gso-Chr8 5145114 5148701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0556 257 383 C2H2 Transcription Factor Family AT2G19380 27.344 4.05e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0556 - - gmx:100812073 760.755