Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0549 ATGGCTTGGTGGCGCAATAGTCTTCAAAATCCAACTCTTCTTTTCTGTTATGCAACAAGAACCATTTTCATCCTCCAAATAATCCCTCTTGCAAACTCACTATCATTTGATTACCCGAACTTTAAGAATGGTGATGTAAAATGGGAAGGTGATGCTTCTATTCTAAAAGGAGCCATCCAAGTCACATCCAACACCATGGACCAAAATAACAATTACAGTGTTGGGAGAGTCACAAGTTATAAGAAAATGCTCCTCTGGGATATGAACACTGGAAAGCTTGCTGATTTCACTACTAAATTTTCCTTTGTTGTTTTTTCAGGGAAGAGTTACTATGGAGATGGAATGGCATTTTTCCTTGCTGATCCTAATCTCCCACTTCTGAAGAATATTAGAGAAGGAGGTGGTCTTGGCCTTGTGGATGGCAAACAAGTGCTGAATTCAACTCAACCATTTGTAGCAGTGGAGTTTGACACCTTCCACAATAAATGGGACCCTCAAGGTGGCACTCATGTAGGTCTGAATTTCAACTCTATGAGGTCTAACATAACTAAGCAATGGTTGACAGATATTCAAATATGGAATGTTTATAATTGCAGCATTGAGTACAACTCAAGCACTCTTAATTTGAGCGTTTCGTTCACTACGTACAATAATGTTAGTAAACCAGTTGAGGAATACATATCTTACAAGGTTGATTTGAGAGATTACTTGCCGGGGAAGGTTATTCTTGGTTTCTCAGCCGCAACTGGAAAATTGTATGAGGTGCATACACTGAGATCATGGTCATTTAATTCAAGTCTACAGAGTGATGAGAACACAAATGAGATAAAACCAGTAGCAGCACCACCAACTTCAAATCCTGCTTCTGAAAATGAACACAAGATAGGATTGTGGGTGGGGATTGGAATTGGTGTAGGCTTGGTTCTGGGTCTTTTAGGGCTGATTTGTGCTTTATTGTGGAAAAGGAGTAGAGATAAAAAAGGAGAGTTAGTTTTTGATCTCAATATGGCTGACGAATTCCCAAAGGGCACTGGACCTAAGAGCTTTTGCTATAATGAGCTAGTAAGTGCTACAAACAAATTTGCAGAGAAGCTGGGGCAAGGAGGTTTTGGTGGTGTGTATAAAGGTTACTTGAAAGACTTAAAGTCCTATGTTGCTATCAAGAGGATATCAAAAGAGTCTAGACAGGGAATGAAGGAATATGTGACTGAAGTGAAGGTCATAAGCCAATTGAGACATAGAAATTTAGTACAACTCATTGGTTGGTGTCATAGGAAGAATGACTTTCTCCTCATATATGAGTTCATGCCAAATGGAAGCTTAGATTCTCATCTATACGGTGTGAAAAGCTTCTTAACATGGACAGTGAGGTATAACATAGCTTTGGGCTTGGCTTCAGCATTGCTTTACCTACAAGAAGAGTGGGAGCAGTGTGTGATTCACAGGGATATTAAATCAAGCAACATTATGTTGGATTCATGTTTCAATGCTAAACTTGGTGATTTTGGTTTGGCTAGGCTGGTGGATCATGAGAAAGGGTCGCAAACCACGCGTATAGCCGGGACGAGGGGCTATATTGCGCCTGAATATTTCACTTCAGGAAAGGCTACTAAGGAATCTGATATATACAGCTTTGGGGTTGTGTTATTGGAGATAGCCAGTGGAAGAAAACCTGTTGAACTAGAAGCTGAGGAGGGTCAAATAACTGTAGTTGAGTGGGTTTGGAAGCTCTATGGATTGGGAAGGTTCCTTGAAGCAGCTGACCCTAAGTTATGTGGAGAATTTGATGAAAACCAAATGGAACGTTTAGTGATTGTTGGCCTTTGGTGTGTTCATCCAGATTATTCATTCAGACCATCTATAAGGCAAGTGATTCAGGTGCTTAAATTTGAGTCTGCTTTACCTATTCTCCCTGAAATGATGCCTGTGCCAACCTACCTTCCTCCAACAATAAAAGCACTTTTTTCTTCTGTTTCATCTTCCTTTTGGGGTAGAAGTTAG 2001 0.4023 MAWWRNSLQNPTLLFCYATRTIFILQIIPLANSLSFDYPNFKNGDVKWEGDASILKGAIQVTSNTMDQNNNYSVGRVTSYKKMLLWDMNTGKLADFTTKFSFVVFSGKSYYGDGMAFFLADPNLPLLKNIREGGGLGLVDGKQVLNSTQPFVAVEFDTFHNKWDPQGGTHVGLNFNSMRSNITKQWLTDIQIWNVYNCSIEYNSSTLNLSVSFTTYNNVSKPVEEYISYKVDLRDYLPGKVILGFSAATGKLYEVHTLRSWSFNSSLQSDENTNEIKPVAAPPTSNPASENEHKIGLWVGIGIGVGLVLGLLGLICALLWKRSRDKKGELVFDLNMADEFPKGTGPKSFCYNELVSATNKFAEKLGQGGFGGVYKGYLKDLKSYVAIKRISKESRQGMKEYVTEVKVISQLRHRNLVQLIGWCHRKNDFLLIYEFMPNGSLDSHLYGVKSFLTWTVRYNIALGLASALLYLQEEWEQCVIHRDIKSSNIMLDSCFNAKLGDFGLARLVDHEKGSQTTRIAGTRGYIAPEYFTSGKATKESDIYSFGVVLLEIASGRKPVELEAEEGQITVVEWVWKLYGLGRFLEAADPKLCGEFDENQMERLVIVGLWCVHPDYSFRPSIRQVIQVLKFESALPILPEMMPVPTYLPPTIKALFSSVSSSFWGRS* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0549 666 Pfam Protein kinase domain 362 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0549 666 CDD lectin_legume_LecRK_Arcelin_ConA 34 267 IPR001220 GO:0030246
Gso8g0549 666 ProSitePatterns Protein kinases ATP-binding region signature. 365 388 IPR017441 GO:0005524
Gso8g0549 666 CDD STKc_IRAK 365 629 - -
Gso8g0549 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Gso8g0549 666 Gene3D Phosphorylase Kinase; domain 1 346 435 - -
Gso8g0549 666 SUPERFAMILY Protein kinase-like (PK-like) 346 653 IPR011009 -
Gso8g0549 666 ProSitePatterns Legume lectins beta-chain signature. 152 158 IPR019825 -
Gso8g0549 666 ProSiteProfiles Protein kinase domain profile. 359 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0549 666 Gene3D Transferase(Phosphotransferase) domain 1 436 647 - -
Gso8g0549 666 SMART serkin_6 359 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0549 666 PANTHER - 18 665 - -
Gso8g0549 666 Pfam Legume lectin domain 33 274 IPR001220 GO:0030246
Gso8g0549 666 Gene3D - 31 284 - -
Gso8g0549 666 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE 18 665 - -
Gso8g0549 666 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 273 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0549 Gso-Chr8 5086592 5088705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0549 8 646 Receptor kinase-like Gene Family AT5G10530 47.872 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso8g0549 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0549 - - gmx:100780181 1288.48