Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0548 ATGGGGAGAGGAAAGATCGTGATTCGAAGGATTGACAATTCCACTAGCCGGCAAGTGACGTTTTCCAAGAGAAGAAATGGGTTAGTGAAGAAAGCTAGAGAGCTATCTATTCTGTGTGATGCAGAAGTTGGATTGATTGTGTTCTCCAGCACTGGCAAGCTTTATGACTATGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTATAACAAGGTCAAAGAAGACCATCAACAGTTAATAAATCCTGCATCAGAAGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCTTGCGGCAACAAGTGCAGTACATGCAAGAATGTCACAGGCAAATGATGGGCCAAGAGCTTTCTGGATTGGGTATCGAAGAGTTAGGAAATCTGGAAAAGCGACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAGAAGGGAAGCCTTGCTCATCAAGAAAATGTAGAACTTAATAGAAAGATAAATCTCATCCGCAAGGAAAATGAAGAACTACAAAAGGTTATTGAAGCTAAGTGTAGAAAAGGTGTTGCAGCATCCAATCCTCCATTCACTATCAACTATGGATGTAATATGCTTGCTCCTATCAGTCTCCAGCTAAGCCTGCCAGAGTCAACGTAG 624 0.4247 MGRGKIVIRRIDNSTSRQVTFSKRRNGLVKKARELSILCDAEVGLIVFSSTGKLYDYASTSMKSVIERYNKVKEDHQQLINPASEVKLWQREVASLRQQVQYMQECHRQMMGQELSGLGIEELGNLEKRLEMSLKGVRMKKGSLAHQENVELNRKINLIRKENEELQKVIEAKCRKGVAASNPPFTINYGCNMLAPISLQLSLPEST* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0548 207 Coils Coil 149 176 - -
Gso8g0548 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 207 - -
Gso8g0548 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso8g0548 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso8g0548 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso8g0548 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso8g0548 207 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Gso8g0548 207 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso8g0548 207 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Gso8g0548 207 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gso8g0548 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso8g0548 207 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 207 - -
Gso8g0548 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso8g0548 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso8g0548 207 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0548 Gso-Chr8 5069303 5075161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0548 1 207 MADS-box Gene Family AT4G37940 60.190 9.26e-85 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso8g0548 K-box 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0548 K09264 - gmx:100779647 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0548 8 5069303 5075161 Gso11g2794 11 43696183 43711819 PCT
Gso11g2794 11 43696183 43711819 Gso8g0548 8 5069303 5075161 PCT