LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso8g0547	ATGGGGAGAGGAAAGATTCCCATTCGAAGAATCGAAAATTCGACGAACCGACAAGTGACTTTCTGTAAGAGAAGAAATGGGTTGCTGAAGAAAACTAGAGAACTATCCATTCTCTGTGATGCAGAAGTTGGAGTGATAGTGTTTTCCAGCACTGGCAAGCTTTATGAATATTCAAACACCAGCATGGAAACAATCATTGAGCGCTTTAACAAGCAAAACAATAATCATCATCGGCTAATGGATGCTACTTCAGCAATCAAGGGAGAAGCAGCAAGCTTGAGGCAACAACTGCAGCATTTGCAAGAAAACCACAGGCAACTGATGGGTGAAGAACTTTCTGGTTTGGGTATTAATCAGCTAAAACATCTGGAAAATCAACTACAAATGAGTTTGAATAACGTTCGCAATAAAAAGGATCACATTTTCAGTGATGAGATCAAGGAATTACAACAAAAGGGAAGCTTGATTCGTCGACAAAATGAAGAACTTCATAAGAAGATAGACCTTATCCACAATGAAAATGCAGAACTAAAGAAGGTTATTGAAGCAAGGCATAAGGAAGAAGAAAGGGCAGCACTCAAACCTCCATGTGCTATCAAAAATAGATATGATACACTTGACCCTAACAGTCTGCAACAAAGGCAGTCCCAACCCCAACCCAGTGAACCATCAGCCGAAGTGATGATTATGGGGTACTCCCTCAAATTGAAGATGTAA	717	0.4017	MGRGKIPIRRIENSTNRQVTFCKRRNGLLKKTRELSILCDAEVGVIVFSSTGKLYEYSNTSMETIIERFNKQNNNHHRLMDATSAIKGEAASLRQQLQHLQENHRQLMGEELSGLGINQLKHLENQLQMSLNNVRNKKDHIFSDEIKELQQKGSLIRRQNEELHKKIDLIHNENAELKKVIEARHKEEERAALKPPCAIKNRYDTLDPNSLQQRQSQPQPSEPSAEVMIMGYSLKLKM*	239

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso8g0547	238	PANTHER	MADS-BOX TRANSCRIPTION FACTOR	1	237	-	-
	Gso8g0547	238	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Gso8g0547	238	SUPERFAMILY	SRF-like	2	77	IPR036879	GO:0003677\|GO:0046983
	Gso8g0547	238	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Gso8g0547	238	ProSiteProfiles	K-box domain profile.	83	173	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gso8g0547	238	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Gso8g0547	238	Coils	Coil	83	110	-	-
	Gso8g0547	238	Coils	Coil	146	190	-	-
	Gso8g0547	238	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Gso8g0547	238	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Gso8g0547	238	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Gso8g0547	238	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	237	-	-
	Gso8g0547	238	Pfam	K-box region	83	167	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gso8g0547	238	Coils	Coil	117	140	-	-
	Gso8g0547	238	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Gso8g0547	238	CDD	MADS_MEF2_like	2	77	IPR033896	GO:0000977\|GO:0045944
	Gso8g0547	238	Gene3D	-	13	91	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso8g0547	Gso-Chr8	5038840	5058245	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso8g0547	1	229	MADS-box Gene Family	AT2G14210	54.506	5.98e-70	213

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Gso8g0547		K-box	1.3e-22	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso8g0547	K09264		-	gmx:100779119	457.603

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso8g0547	8	5038840	5058245	Gso15g0511	15	4582155	4596708	PCT
	Gso15g0511	15	4582155	4596708	Gso8g0547	8	5038840	5058245	PCT