Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0544 ATGGAGAACTATCAGTACCCGGCGTCGTACCCTGACTCCGGCGAGTCCTCCCCGCGCTCGCGCGAGATCGACTTCGAGAACCCGCCGCCGTGGGACGAGCAGCAGAACCAAAACTACAAGGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCCCGCACCCACGACAATCAGCTCTCCTACGTCGGCGGCGACACCAAGATCCTCGCCGTCGACCGCTCCGTTAAGTTCTCCGCCTTCCTCTCCAAGCTCTCCGCCCTCTGCGACTCCCCGCCACAGGACCTCACCTTCAAGTACCAGCTCCCCGGCGAAGACCTCGACGCCCTCATCTCCGTCACCAACGACGACGACCTCGAACACATGATGCACGAATACGACAGACTCTATCGCCCTAACCTAAAACCTGTTAGAATGAGACTCTTCCTTTTCACACTCTCTAATTCAAACCCTAATTCCTCTTTCTCCTCCGAACGCGACCGTTTCGTTGAGGCTCTTAATTCGGGTCCGGTTCCTTCTCAACCCGATCCGATCAAAACCCCACCCGTTACGCCTTCTAATGTTGATTATCTCTTCGGTCTCGATAAAGCCGTTGCTCCTCCAAATCTTCCTCCGAACTTCGCAGCGGTTAAATTCCACGATCCGGTGCCGGAACCTGTCGCTCCGACGCCGGTAGAGTATCAATCGAGAGTTTCCGATCGGGTTGTTGGATCGGATCCGAATGTGAATTCGATGGAAATTCAGAGACAGATGCAGCAGGAGATGCAGCGATTGCAGATTGCGGAGAATGAATATCGTAGAAGGAGTGAGGATGGATTTGCAACTGGTTATACTGCTGCAGCCGGAGGAGATTATTACATGCAGAAGGTGCAGGAGAAGGTTCCGCCGCAGAATGCGGCGGTGCCGCCTCCGGCGGCGTACTGGTCGGAGAAGCAGTTTTCCGGGGAGGGATATCAGACGACGGTGACGACGGCGGCTCCGGGAGGAGGTGACCAGCCGATGTATGTTATGGCGGCGCCGGGGACGTTCTATCACCACTCGCCGGTGATGCGACCTCCGGCGGCGGCGCAGGGATACTACGCTGTGCAGAGGATGGGTTCTGATGGCTACCGTGAACAGCAGGCGGTGTACGGAGGCATGGCTGCGCCGAAAGCGGGGTTTTCGACGGCGGGGATGGTTAAGGGGCCGGCGTATTCGGAGGGATATAGTGGCGGCGTGGTGAGGCCGGCGGGGTTGCCGGATAATGCGGCGTATGCGCAGGTGGCGTATGATAGCGCGAGTGGGAGACAGGTTTACTATACTGCGCAGGGAGGAGTGGTGCACGCGCCGCCGCAGTACCAGGGGGGTCCGCCTCAGGATGTGAGGCCGGGTGGGGTTTCGGTGGGGCAGGATGGTAAGGTGGTTAACAAGGTTAACCAAGGTTCTGTGTGA 1431 0.5828 MENYQYPASYPDSGESSPRSREIDFENPPPWDEQQNQNYKAKFMCSYGGKIQPRTHDNQLSYVGGDTKILAVDRSVKFSAFLSKLSALCDSPPQDLTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPNLKPVRMRLFLFTLSNSNPNSSFSSERDRFVEALNSGPVPSQPDPIKTPPVTPSNVDYLFGLDKAVAPPNLPPNFAAVKFHDPVPEPVAPTPVEYQSRVSDRVVGSDPNVNSMEIQRQMQQEMQRLQIAENEYRRRSEDGFATGYTAAAGGDYYMQKVQEKVPPQNAAVPPPAAYWSEKQFSGEGYQTTVTTAAPGGGDQPMYVMAAPGTFYHHSPVMRPPAAAQGYYAVQRMGSDGYREQQAVYGGMAAPKAGFSTAGMVKGPAYSEGYSGGVVRPAGLPDNAAYAQVAYDSASGRQVYYTAQGGVVHAPPQYQGGPPQDVRPGGVSVGQDGKVVNKVNQGSV* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0544 476 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 472 - -
Gso8g0544 476 Pfam PB1 domain 56 144 IPR000270 GO:0005515
Gso8g0544 476 PANTHER OS05G0427100 PROTEIN-RELATED 1 472 - -
Gso8g0544 476 Gene3D - 61 145 - -
Gso8g0544 476 SMART PB1_new 55 144 IPR000270 GO:0005515
Gso8g0544 476 MobiDBLite consensus disorder prediction 1 16 - -
Gso8g0544 476 CDD PB1_UP2 44 144 - -
Gso8g0544 476 SUPERFAMILY CAD & PB1 domains 56 150 - -
Gso8g0544 476 Coils Coil 244 271 - -
Gso8g0544 476 MobiDBLite consensus disorder prediction 1 34 - -
Gso8g0544 476 MobiDBLite consensus disorder prediction 446 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0544 Gso-Chr8 5013156 5014802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0544 39 168 MAP Kinase Kinase Kinase AT5G57610 42.336 1.54e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0544 - - gmx:100810467 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1564 7 37417530 37419321 Gso8g0544 8 5013156 5014802 GST
Gso8g0544 8 5013156 5014802 Gso15g0520 15 4681366 4683063 PCT
Gso8g0544 8 5013156 5014802 Gso11g2788 11 43629298 43631039 PCT
Gso15g0520 15 4681366 4683063 Gso8g0544 8 5013156 5014802 PCT
Gso11g2788 11 43629298 43631039 Gso8g0544 8 5013156 5014802 PCT