Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0538 ATGGCTTCCTCGGAGATCGAGGTGGTTTCATCATCATCATCGGTCTCCAAACCCAACAACGACCAGCCTCCAATCCTCGACGTTTTCACCGCCTCTGCTCACGGCGACTTCAACAAATTGAGAACCTTCGTCGAACAAGACGGTGCCTCCGTCTCTCTTCCCGATTTTAGCGGCTATTACGCTCTTCAGTGGGCCTCGCTCAACAACTTTCACGACATTGCGCACTATCTCATTCAGCATGGGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCACTGGGCAGCGGTTCACGGTTCAACTCTAGCTGCTGATGTGCTTGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGATGTAAATGGATACCGGGCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCTGACACAGTAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTTGTACACCGTTGCACTGGGCTGCATTAAGGGGAAATGCAGAGGCATGTGCTGTGCTTGTACATGCAGGCACAAAAGAAGAACTGATGGTGAAGGACAATGCTGGGAACACACCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTCCTTTCCTTTCAAATCAACAACGGGCTCATAGCAACTACTGGAAAGGGAAACTGTGTAGTGGGATAGTGACAGATATTGGTTATGCTCCCATCTTATTCTGTACTATAATCTTTCTCTCAATCCTCTTCATCAACTCAGTTGTTGCAGCTCCTAACCTTAAAAAGATTACTGCTGTTGTTGGACTTTGGGCATGGACAGCGCTTTCTTCGGCTGTTGGTTCCCTGATTATGTTCTATAAGTGTAGTAGTAAAGATCCTGGTTATATAAAACGACTGGGAGAATTGGGTACTCAAAGTGATACAGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCAACTTGTAAGCGATGTGTGGAACAGTTTGACCACCACTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCCTGGGAACTTTGACTTCTTCCATTTCTGGTGCCGTTGCAGTTCAAAGAATTTGTACATCTAAACCAGCATTACTGGCAGGAGAAACATGGATCCATTATGTGTTAGTAAGACATCTAGGTTTAGTTGTGTTTTTGGTGATGGATGCTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATACAACCACGGTTGTTGGAAGAATTGTGCTGACTTCTTTTTTCTCGGCTATACAAATGATGATGAGATTGCTTGGCCTCCATTACAGCAGGTGGCAACTTAG 1626 0.4434 MASSEIEVVSSSSSVSKPNNDQPPILDVFTASAHGDFNKLRTFVEQDGASVSLPDFSGYYALQWASLNNFHDIAHYLIQHGADVNAKDNMQQTALHWAAVHGSTLAADVLVENGARVEAADVNGYRAVHVAAQFGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTVRLLLFRDASQGRQDKDGCTPLHWAALRGNAEACAVLVHAGTKEELMVKDNAGNTPVQLAYDKGHRHVAPFLSNQQRAHSNYWKGKLCSGIVTDIGYAPILFCTIIFLSILFINSVVAAPNLKKITAVVGLWAWTALSSAVGSLIMFYKCSSKDPGYIKRLGELGTQSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSSISGAVAVQRICTSKPALLAGETWIHYVLVRHLGLVVFLVMDAVVFVATTTLTITQASMIARNVTTNELANSSRYDYLRGPDGRFRNPYNHGCWKNCADFFFLGYTNDDEIAWPPLQQVAT* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0538 541 ProSiteProfiles Ankyrin repeat region circular profile. 90 121 - -
Gso8g0538 541 PANTHER PROTEIN S-ACYLTRANSFERASE 24 3 531 - -
Gso8g0538 541 ProSiteProfiles Ankyrin repeat profile. 123 156 IPR002110 GO:0005515
Gso8g0538 541 ProSiteProfiles Ankyrin repeat profile. 90 122 IPR002110 GO:0005515
Gso8g0538 541 ProSiteProfiles Ankyrin repeat region circular profile. 157 183 - -
Gso8g0538 541 ProSiteProfiles Ankyrin repeat region circular profile. 57 89 - -
Gso8g0538 541 Pfam DHHC palmitoyltransferase 364 491 IPR001594 GO:0016409
Gso8g0538 541 ProSiteProfiles Ankyrin repeat profile. 57 89 IPR002110 GO:0005515
Gso8g0538 541 ProSiteProfiles DHHC domain profile. 364 414 - -
Gso8g0538 541 PANTHER - 3 531 - -
Gso8g0538 541 Pfam Ankyrin repeats (3 copies) 34 120 IPR002110 GO:0005515
Gso8g0538 541 Pfam Ankyrin repeats (3 copies) 129 214 IPR002110 GO:0005515
Gso8g0538 541 Gene3D - 195 248 IPR036770 -
Gso8g0538 541 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Gso8g0538 541 ProSiteProfiles Ankyrin repeat profile. 190 222 IPR002110 GO:0005515
Gso8g0538 541 SUPERFAMILY Ankyrin repeat 29 247 IPR036770 -
Gso8g0538 541 MobiDBLite consensus disorder prediction 1 22 - -
Gso8g0538 541 Gene3D - 19 139 IPR036770 -
Gso8g0538 541 Gene3D - 140 194 IPR036770 -
Gso8g0538 541 SMART ANK_2a 190 219 IPR002110 GO:0005515
Gso8g0538 541 SMART ANK_2a 57 86 IPR002110 GO:0005515
Gso8g0538 541 SMART ANK_2a 157 186 IPR002110 GO:0005515
Gso8g0538 541 SMART ANK_2a 225 255 IPR002110 GO:0005515
Gso8g0538 541 SMART ANK_2a 90 119 IPR002110 GO:0005515
Gso8g0538 541 SMART ANK_2a 123 153 IPR002110 GO:0005515
Gso8g0538 541 ProSiteProfiles Ankyrin repeat region circular profile. 190 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0538 Gso-Chr8 4951167 4960593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0538 31 286 Miscellaneous Gene Families AT1G05640 27.675 1.43e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0538 K20032 - gmx:100807263 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1570 7 37468719 37480994 Gso8g0538 8 4951167 4960593 GST