Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0519 ATGAACTGGCCTACCTTAACTTTCACAATAGGAATTTGCATAGGCTTTGTGGTTGGGGTGAGTTTGGCATTATCGATTGTATCCTGCGTCATACGTGGAAGGAAGCGCACAGACATTGAGAGGAGCAGTTCTCACAGTGCAGTGACCATTCCTGTTCAGGTCCAAGTGGTTGATTCTAACTCAACATTATCAGAGGGTCAGGAATCACCCAGAACATCTGAGTGGAGTAACACATCTATATGGTTGGAAAGACTTAGGAGGAATAGTTCAGTGTCAGCATGTGGAATTCCCAAGTATTTTTACAAAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGCATTTGGTCCTGTTTATAAAGCGCAGATGGATACAGGTGAGACAGTTGCTGTTAAAGTTCTTGGCACTAATTCAAGGCAAGGGGAACAGGAGTTTTTAACTGAGCAGGTTTTATTACTTGGAAGATTACATCACAAAAGCCTTGTGGATTTGGTGGGATATGTGGCAGAAAGAGGAAAACATATGCTTCTTTACATTTACATGAGCAATGGCAGTCTTGATTCCCATTTATATGCTGATTTGGGAAAAAATCACAAGCCATTGAGCTGGGATTTGAGGCTTAGCATAGCGCTAGATGTTGCAAGAGGACTGGAATATCTACATCATGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAGGTCACTGATTTTGGGCTTTCCAGACCAGAGATGATCAAACCTCGCACATCAAATGTCAGAGGAACTTTTGGATATGTTGATCCCGAGTATTTGTCTACAAGAACCTTCACTAAGAAAAGCGATGTTTATAGTTTTGGTGTGCTACTGTTTGAACTTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTAGCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCACAATTAAATGGAAAATATGATGTGCATAATCTTCATGACATGGCTTCACTTGCATTCAAATGTGTTAATGAAGTCTCCAAAAGCCGACCTTCGATGTGCGAAATTGTTCAAGAATTATCTCAGATTTGTAAGAGGCAAATTAAAGATCATGGTGGAACATCTCCTGCTGCATTGAAGGAAGTGTCCATTGAAGTGGGCCAGACTGAAATTCAGGACTTCTCATCAATTGAGAGTTCAAAGATGGTGCGCAGATTGCATAGCCGATGA 1278 0.4178 MNWPTLTFTIGICIGFVVGVSLALSIVSCVIRGRKRTDIERSSSHSAVTIPVQVQVVDSNSTLSEGQESPRTSEWSNTSIWLERLRRNSSVSACGIPKYFYKDIQKATSNFTTIIGNGAFGPVYKAQMDTGETVAVKVLGTNSRQGEQEFLTEQVLLLGRLHHKSLVDLVGYVAERGKHMLLYIYMSNGSLDSHLYADLGKNHKPLSWDLRLSIALDVARGLEYLHHGASPPVVHRDIKSCNILLDQSMRAKVTDFGLSRPEMIKPRTSNVRGTFGYVDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAVMESEGKVGWEEIVDPQLNGKYDVHNLHDMASLAFKCVNEVSKSRPSMCEIVQELSQICKRQIKDHGGTSPAALKEVSIEVGQTEIQDFSSIESSKMVRRLHSR* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0519 425 ProSiteProfiles Protein kinase domain profile. 109 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0519 425 PANTHER OS01G0253100 PROTEIN 2 410 IPR045271 GO:0004714|GO:0006468
Gso8g0519 425 Gene3D Phosphorylase Kinase; domain 1 74 185 - -
Gso8g0519 425 Pfam Protein tyrosine and serine/threonine kinase 111 376 IPR001245 GO:0004672|GO:0006468
Gso8g0519 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Gso8g0519 425 CDD STKc_IRAK 115 379 - -
Gso8g0519 425 Gene3D Transferase(Phosphotransferase) domain 1 186 394 - -
Gso8g0519 425 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 2 410 - -
Gso8g0519 425 SMART serkin_6 109 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0519 425 SUPERFAMILY Protein kinase-like (PK-like) 93 376 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0519 Gso-Chr8 4813510 4819115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0519 98 405 Receptor kinase-like Gene Family AT1G51820 43.260 3.11e-70 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Gso8g0519 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0519 - - gmx:100816549 841.262