Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0515 ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGTGAAAACTGGTGGAGTAGTACTACTATTGATTCAACAAGAAGTAGTGTGTTGTTCCCTCTGAGTTCATCATCATCATCTATATCTTCTTCTCCTTGTTCTGTGGCAGCTAATAATAATGATGCAGGAAACTATAGCACTAGGGGAACTAGTGACACGGATTTGAAGGCAACAAAATGTTGTGCTGAAGACACTAATGGCAACAATCTGGTTTCTGACACTACTTACCTGGGTTTCGTTGATGTACAGAAGCCACATAATAAGAGTGAATCAGCAGCCAGTGGAAGTGGTGGCATGCTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTCACATCTTCAACATCATCTTCAGAGAATTGGAATCAGCCTCTGTTATTTCGATGTAATGGAAGGCCAGAGAGCAATTTCCACTCCTTGATTCAGGAAGAAACGGGAATGGATTCTTCTAATTCACAAATCCATAGGGATTGGATCCCAAAGAGCTTCTCCTCTGGCGGTGGAAACCAACAAATTGATTATAATAATTTCAAGCCATTATTATTGAGCAAACAAGAATTTTCATTAGATCACCATAGTCTAAGTTCTTTAACCACTACTGGGTTATCATCAAACCGTGGATTCCCAATTGGATCAGCCTCATCATATGGTAACCCTTCAACGTTGCAAAGCCTATATGACCCTAATTATAATCCTCATCCACAGCATAACTCACTTTTCACCAACCGTCCCATGTTCTATTCATCAAAAGCATGTTATGGGACACCCTGCACCGAACTACCACAACCATGGTCTAAAGTCTCCACTTTTTTGAAGCCCACGACCACAACAAATGCAAAGCAACAACACCCTAATATTGGACTTCACTTTTCTAACAACACTCCTTTCTGGAATGCTTCCGCCGAGGCACTTCACGACATAAGAGTTGGTACGTTTGCTTCATCACAATCACAATATCATAGGCCAACCTTCGATGGAGAGAAACCCAATTGCCCAAGTACTCTATTAAACAAGTTCAATAGTGAAAAAACTCTAGTGTCGGCATCAATGATGACTAAGAAAAATGTTTGTGAACCAGCATTAAAGAGGCCAAGAATTGAAACTTCATCTCCATTGCCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCATCCGTTCTTCACGAAGCCATCGAATACATTAAGTTCCTTCATGATCAAGTCAATGTTTTGAGTACTTCATATATGAAAAATGGAGCTCCCATTCAACATCAGCAGGGCTGTGATGATCTGAAAGACTCAGAAGGACCACAACAAGATTTGAAAAGCAAAGGGCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTGGCAACAGAAGCCACTAGTGCTGAATTGTGGACGCCTACATTCAGATCAGGCGCACTCTTACGGTAG 1503 0.4205 MAEEFQARICGENWWSSTTIDSTRSSVLFPLSSSSSSISSSPCSVAANNNDAGNYSTRGTSDTDLKATKCCAEDTNGNNLVSDTTYLGFVDVQKPHNKSESAASGSGGMLIDSTLQMMGFGLTSSTSSSENWNQPLLFRCNGRPESNFHSLIQEETGMDSSNSQIHRDWIPKSFSSGGGNQQIDYNNFKPLLLSKQEFSLDHHSLSSLTTTGLSSNRGFPIGSASSYGNPSTLQSLYDPNYNPHPQHNSLFTNRPMFYSSKACYGTPCTELPQPWSKVSTFLKPTTTTNAKQQHPNIGLHFSNNTPFWNASAEALHDIRVGTFASSQSQYHRPTFDGEKPNCPSTLLNKFNSEKTLVSASMMTKKNVCEPALKRPRIETSSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGAPIQHQQGCDDLKDSEGPQQDLKSKGLCLVPISSTFPVATEATSAELWTPTFRSGALLR* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0515 500 CDD bHLH_AtbHLH_like 383 434 IPR045239 -
Gso8g0515 500 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 377 426 IPR011598 GO:0046983
Gso8g0515 500 PANTHER TRANSCRIPTION FACTOR BHLH123 100 487 - -
Gso8g0515 500 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 100 487 - -
Gso8g0515 500 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 387 444 IPR036638 GO:0046983
Gso8g0515 500 Gene3D - 387 448 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0515 Gso-Chr8 4766590 4770431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0515 257 493 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.341 1.37e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0515 - - gmx:100813887 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1597 7 37776671 37780730 Gso8g0515 8 4766590 4770431 GST
Gso8g0515 8 4766590 4770431 Gso15g0553 15 4897999 4901402 PCT
Gso8g0515 8 4766590 4770431 Gso11g3029 11 46143744 46149771 PCT
Gso15g0553 15 4897999 4901402 Gso8g0515 8 4766590 4770431 PCT
Gso11g3029 11 46143744 46149771 Gso8g0515 8 4766590 4770431 PCT