Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0513 ATGGCGACCCATCTCCCCGACTACTTCAAGTGTCCAATCTCCCTGGAAATAATGTCGGACCCTGTCATCCTCTCTTCGGGTCACACCTTCGACCGTTCCTCAATTCAACGTTGGCTCGATGCGGGTCACCGAACATGTCCAATTACCAAACTACCCCTTCCCGACCACCCCTCCCTCATCCCCAACCACGCGCTGCGAAGCTTAATCTCCAACTACACATTCCTCTCCCCTCTCCACCAAACAATTTCCCAACCCGAAACCCTAATTTCAACCCTCACTTCCAATTCTTCATCCTCCGATTCCAAAATTGAGGCCCTTAAGCACCTCACGCGCTTATCGAAGCGCGATTCGGCGTTCCGCCGGAGGCTGGCGGAGTCCGGCGCCGTCCCCGCCGTGCTCGCCGCCGTGGACGACCCGAGCCTCCAGGAGAAGGCGCTCCCCCTGCTCCTCAACCTCACCCTCGACGACGACTCGAAAGTCGGCCTCGTCGCCGAGGGCGTGGTCGCGCGAGTGGTAGCGGTGCTCCTCCACGCGCCGTTCCCGGACTGCCGCGCCGTCGCGGCGACCATCGTCACGAGCCTCGCGGTCGTGGAGGTGAACAAGGCCACCATCGGCGCGTTCCCGGCGGCGATCGCGGCGCTCGTGGCGATCCTCCGCGACGGGGGCAAGGGGCGGGAGCGGAAGGAGGCTGCCACCGCGCTCTACGCGCTCTGCTCCTTTCCGGACAACCGGAGAAGAGCCGTGAGCTGCGGTGCGGTGCCGATTCTCCTCACAAACGTCGGAATTGGACTCGAACGGTGTGTTGAGGTGATCGGCGTTTTGGCGAAGTGCAAAGAAGGGAGGGAGCAAATGGAATGTTATGACGGTTGTGTTCAGATTCTGGTTAACGTTTTGAGGAACGGAAGCTCGAGGGGGATTCAATATGCGCTCTTTGCACTCACTTCGGTTTGTTCTTATAGCCAAAGAATGGTTATGGTGGCTCTGGAAGAAGGGGGTCTAGAAGCTTCTCTTGGGTTTGTGGAAGATGATAATGAGAAAGTGAGGAGGAATGCATGTAATTTCATTAAGGTTCTGCGTTTCAACCACAGTAGGGTGAGGTGA 1101 0.5822 MATHLPDYFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHPSLIPNHALRSLISNYTFLSPLHQTISQPETLISTLTSNSSSSDSKIEALKHLTRLSKRDSAFRRRLAESGAVPAVLAAVDDPSLQEKALPLLLNLTLDDDSKVGLVAEGVVARVVAVLLHAPFPDCRAVAATIVTSLAVVEVNKATIGAFPAAIAALVAILRDGGKGRERKEAATALYALCSFPDNRRRAVSCGAVPILLTNVGIGLERCVEVIGVLAKCKEGREQMECYDGCVQILVNVLRNGSSRGIQYALFALTSVCSYSQRMVMVALEEGGLEASLGFVEDDNEKVRRNACNFIKVLRFNHSRVR* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0513 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Gso8g0513 366 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 359 - -
Gso8g0513 366 Gene3D - 69 261 IPR011989 -
Gso8g0513 366 SUPERFAMILY RING/U-box 4 73 - -
Gso8g0513 366 SMART arm_5 277 318 IPR000225 GO:0005515
Gso8g0513 366 SMART arm_5 320 360 IPR000225 GO:0005515
Gso8g0513 366 SMART arm_5 116 154 IPR000225 GO:0005515
Gso8g0513 366 SMART arm_5 155 196 IPR000225 GO:0005515
Gso8g0513 366 Gene3D - 262 359 IPR011989 -
Gso8g0513 366 CDD RING-Ubox_PUB 9 50 IPR045210 -
Gso8g0513 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
Gso8g0513 366 PANTHER U BOX DOMAIN-CONTAINING 1 359 - -
Gso8g0513 366 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Gso8g0513 366 SUPERFAMILY ARM repeat 86 358 IPR016024 -
Gso8g0513 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0513 Gso-Chr8 4743774 4745371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0513 1 358 U-box Gene Family AT4G21350 59.621 2.19e-140 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0513 - - gmx:100813349 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1600 7 37808085 37809722 Gso8g0513 8 4743774 4745371 GST