Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0512 ATGAAGTTTTTTTCAGCAATAGAGTTTCTAAGTTCATTTCTTGTGCTGATGTTCTTCTACCCTTTTTGCCACTCACTCGACAACACCATAACCATAAACCACCCCATTAGAGACGGCGACGTTTTGGTCTCCAACGGTTTAGGAAACTTTGCGCTCGGTTTCTTCAGCCCGCGAAACTCCACAAACCGTTACGTTGGGATTTGGTACAACAAAATCTCGGAACAAACGGTTGTGTGGGTTGCCAACAGAGACACTCCTCTTAACGACACTTCCGGTGTTCTCAAAATAAGCAACAACGGAAACCTTGTACTCCACGACAACAGCACCCGAAGCCTCAACCCGGTTTGGTCCTCCAACGTTTCCATTGAATCCACAAATAGCATTTCAGCCAAGCTTTTGGATACAGGAAACCTAGTTTTGATCCAAACCAACAACAACAACATTCTATGGCAGAGTTTTGATTATCCCGGGAACACTATGCTTCCGTTCATGAAACTCGGGTTGAACCGGAAAACCGGCCTGGACCGGTTCCTAGTATCTTGGAAATCTCCAAACGACCCGGGAACTGGGAACATGACTTATAAGATCGACCCAACCGGGTTTCCGCAATTGTTTCTCTACAAAGACAAAATCCCTTTATGGAGGGTCGGGTCGTGGACGGGTCAGAGATGGAGCGGGGTGCCCGAGATGACACCGAATTTCATCTTCACCGTTAACTACGTCAACAACGAGAGCGAGGTCTCCATAATGTATGGAGTGAAAGACCCCAGCGTTTTCTCGAGAATGGTGCTGGACGAGAGCGGCCATGTGGCAAGGTCCACGTGGCAGGCTCATGAACATAGGTGGTTTCAAATATGGGATGCGCCGAAGGAGGAGTGCGACAACTTCCGACGGTGCGGGTCGAACGCGAACTGCGATCCATACCACGCGGACAAGTTCGAGTGTGAGTGTTTGCCCGGGTTCGAACCGAAATTCGAAAGGGAATGGTTCCTTAGAGACGGGTCGGGTGGGTGCGTGAGGAAGAGTAATGTGTCCACGTGTCGGAGCGGGGAGGGGTTTGTGGAGGTGACACGTGTGAAGGTACCCGACACGTCGAAGGCGCGCGTGGCAGCAACGATTGGGATGAGAGAGTGCAAAGAGAGATGCTTGAGGGATTGTTCGTGTGTGGCTTACACGAGTGCCAACGAGAGCTCTGGAAGTGGGTGTGTTACTTGGCATGGAAATATGGAAGACACTAGGACTTACATGCAAGTGGGACAAAGTTTGTTCGTGCGAGTCGACAAGCTTGAGTTAGCTAAATATGCAAAACATCCGTATGGTTCTCTAGGCAAGAAGGGGATGGTAGCAGTTTTAACCGCTGCTATTTTCTTGTTTTTGTTGTTGGCGATCACTTTCGTGTATTGGTTTGTTAAAACAAGGAGACAAGGAATAAGAAGGGATCGCAAGTATTCCTTTCGTCTTACCTTCGACGACTCAACCGATCTACAAGAATTTGACACTACAAAAAATTCAGATTTACCATTCTTTGAACTTAGCTCTATAGCTGCTGCAACAGACAATTTCTCTGATGCTAACAAGCTTGGCCAAGGAGGTTTTGGTTCTGTTTATAAGGGTCTATTGATTAATGGAATGGAGATAGCAGTGAAGAGACTGTCAAAGTACTCTGGACAAGGCATAGAAGAGTTTAAAAATGAGGTTGTTTTGATCTCAAAGCTCCAACACAGAAATCTTGTGAGGATCCTAGGTTGCTGCATTCAAGGAGAGGAGAAGATGCTAATCTATGAGTATTTGCCAAACAAAAGTTTGGACTCCTTAATTTTTGATGAATCGAAAAGGTCGCAACTAGACTGGAAAAAACGATTTGATATCATCTGTGGGGTTGCTAGAGGGATGTTATACCTCCATCAAGATTCGCGATTGAGAATCATTCATCGAGACCTAAAAGCCAGCAATGTCTTGATGGACTCTTCATTGAACCCCAAAATTGCAGATTTTGGTATGGCTAGAATATTTGGTGGGGACCAAATTGCAGCAAACACAAACCGCGTTGTTGGAACCTATGGCTATATGTCACCAGAATATGCCATGGAAGGACAATTTTCTGTAAAGTCTGATGTATACAGCTTCGGAGTTTTACTTCTAGAGATCGTTACAGGCAGAAAGAATAGTGGTCTATATGAAGACATTACCGCCACAAATTTAGTTGGACATATATGGGATCTATGGAGAGAAGGGAAAACCATGGAGATTGTTGATCAATCATTAGGAGAGTCATGCTCTGACCATGAAGTCCAAAGATGCATCCAAATTGGTCTTTTATGTGTGCAAGATTATGCTGCTGACAGACCATCTATGTCAGCAGTTGTTTTCATGTTGGGTAATGACTCAACTCTTCCTGATCCAAAACAACCAGCATTTGTTTTTAAGAAAACTAATTATGAGAGTTCAAATCCTTCAACCAGTGAAGGAATTTATTCAGTAAATGATGTAAGTATAACTATGATTGAAGCTCGTTGA 2517 0.447 MKFFSAIEFLSSFLVLMFFYPFCHSLDNTITINHPIRDGDVLVSNGLGNFALGFFSPRNSTNRYVGIWYNKISEQTVVWVANRDTPLNDTSGVLKISNNGNLVLHDNSTRSLNPVWSSNVSIESTNSISAKLLDTGNLVLIQTNNNNILWQSFDYPGNTMLPFMKLGLNRKTGLDRFLVSWKSPNDPGTGNMTYKIDPTGFPQLFLYKDKIPLWRVGSWTGQRWSGVPEMTPNFIFTVNYVNNESEVSIMYGVKDPSVFSRMVLDESGHVARSTWQAHEHRWFQIWDAPKEECDNFRRCGSNANCDPYHADKFECECLPGFEPKFEREWFLRDGSGGCVRKSNVSTCRSGEGFVEVTRVKVPDTSKARVAATIGMRECKERCLRDCSCVAYTSANESSGSGCVTWHGNMEDTRTYMQVGQSLFVRVDKLELAKYAKHPYGSLGKKGMVAVLTAAIFLFLLLAITFVYWFVKTRRQGIRRDRKYSFRLTFDDSTDLQEFDTTKNSDLPFFELSSIAAATDNFSDANKLGQGGFGSVYKGLLINGMEIAVKRLSKYSGQGIEEFKNEVVLISKLQHRNLVRILGCCIQGEEKMLIYEYLPNKSLDSLIFDESKRSQLDWKKRFDIICGVARGMLYLHQDSRLRIIHRDLKASNVLMDSSLNPKIADFGMARIFGGDQIAANTNRVVGTYGYMSPEYAMEGQFSVKSDVYSFGVLLLEIVTGRKNSGLYEDITATNLVGHIWDLWREGKTMEIVDQSLGESCSDHEVQRCIQIGLLCVQDYAADRPSMSAVVFMLGNDSTLPDPKQPAFVFKKTNYESSNPSTSEGIYSVNDVSITMIEAR* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0512 838 Pfam Protein tyrosine and serine/threonine kinase 525 789 IPR001245 GO:0004672|GO:0006468
Gso8g0512 838 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKS1 54 834 - -
Gso8g0512 838 Pfam Domain of unknown function (DUF3403) 794 838 IPR021820 GO:0004674
Gso8g0512 838 Gene3D Phosphorylase Kinase; domain 1 485 596 - -
Gso8g0512 838 CDD STKc_IRAK 527 792 - -
Gso8g0512 838 Pfam D-mannose binding lectin 76 182 IPR001480 -
Gso8g0512 838 PIRSF SRK 1 838 IPR024171 GO:0004674
Gso8g0512 838 Pfam PAN-like domain 347 411 IPR003609 -
Gso8g0512 838 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 187 IPR036426 -
Gso8g0512 838 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 54 834 - -
Gso8g0512 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Gso8g0512 838 CDD PAN_AP_plant 345 426 - -
Gso8g0512 838 ProSiteProfiles Bulb-type lectin domain profile. 27 153 IPR001480 -
Gso8g0512 838 SMART serkin_6 521 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0512 838 SMART ntp_6 348 426 IPR003609 -
Gso8g0512 838 Gene3D Transferase(Phosphotransferase) domain 1 597 802 - -
Gso8g0512 838 ProSiteProfiles PAN/Apple domain profile. 347 427 IPR003609 -
Gso8g0512 838 ProSiteProfiles Protein kinase domain profile. 521 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0512 838 SUPERFAMILY Protein kinase-like (PK-like) 506 816 IPR011009 -
Gso8g0512 838 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Gso8g0512 838 CDD B_lectin 33 156 IPR001480 -
Gso8g0512 838 Pfam S-locus glycoprotein domain 214 325 IPR000858 GO:0048544
Gso8g0512 838 ProSiteProfiles EGF-like domain profile. 289 327 IPR000742 -
Gso8g0512 838 SMART blect_4 33 156 IPR001480 -
Gso8g0512 838 Gene3D - 21 153 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0512 Gso-Chr8 4729793 4734059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0512 481 838 Receptor kinase-like Gene Family AT4G11530 57.534 6.82e-136 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso8g0512 PK_Tyr_Ser-Thr 8.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0512 - - gmx:100812814 1703.34