Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0505 ATGTCGAAAACTCCGAAGGAGAAGGAAACGGAGGAGCCTCTGCCAGACCACCTCCGCTGCGGGCGCACGGACGGGCGGCAATGGCGTTGCCGGCGGCGAGTGAAGGAGAATCTGAAGCTCTGCGAGATTCACTACCTCCAAGGTCGCCACCGCCAGTACAAGGAGAAGGTTCCCGAGTCGCTGAAGCTTCAGCGCAAGCGCAAATCTAACAACAACAACAACAACAACAACAACGAGGAAGAAGAAGAAGAAGAAGAAGAGAAACCAGAGCCTGATAAGAAGAATGTTCTCGACGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCATGCTTTCTGAGGATTCCGATGCTTCAGCTTCTTCTCCTCCGGCGAGGAAGAAGGCGCTGAAGCAGGGCGATATGCAGTTGGAGCTCTTGAGGATGGTGCTGAAGAGAGAGGCTGAGAAGAACAAAAACAAGAGCAAGAGCAAGAACAAGAAGAACAATAACAAAAAGAAGAATAAGAAGAAGGAAAAGAGGAGGAAGGAGGAAAAAGAGGAATTGTGTTACACTAAAGAAGAGTTGAGAAGAGAATTGCCAAATGGAGTAATGGAAATCTCTCCGGCTTCACCGACGCGTGATTACAACAATGTAGGTTCGCATTGTGATGTCAAAGTTGGTGTTGATAGTAAAACTGTTACTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCCGCGGGGAAGTTGCAGATTGTGCCGTATGGATCAAACTTGAAAAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGTGAGTCTGGGAATCTCATTCAATGTTCGAGCTGTCAGAGGGAGTTCTTCTGCATAGATTGCGTTAAAGAGCGGTATTTTGACGCTGAAAATGAAATTAAGAAGGCATGTCCAGTTTGTCGTGGAACTTGCCCTTGTAAGTATTGCTCTGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATGTTTGACTGGTAAGAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCAAATAAGTGAAGATCAGAATATTGAGCTAGAAACAGAAGTAAAAATTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGATGCAGTGAGAAAAACTATTGCAATCACTGCAAAACACCCATTTTGGATCTCCATAGAAGCTGTCCTAGTTGTTCATATAGCCTATGCTCAAGTTGTTGTCAGGAATTAAGTCAAGGAAAAGCTTCTGGAGCAATGAACTCATCCGTGTTCAAGCGACCTGATAAAATGAAACCTTGCAGTGCTAGTGAGAACCATACTTTGGAGGAGAGAGCCACATCTATTGGCAATTTAACTGATACTTCAATATTGCCTGAGTGGACAAATGGTAATGGCATTGATAGTCTATCATGCCCTCCTACAGAGCTTGGTGGTTGTGGTAAAAGCCACCTTGAGTTGAGATCTGTTTTCCCTTCCAGTTGGATCAAAGAGATGGAAGCGAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCAAGTTGCTCATTGTGTTTTGACACTGATCACGGTACTAACAGATATAAGCAGTTGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCCACAGTGATGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTTGTCCAAGATGCGCTCCGAAGTACCTCAAACCTCAGTTGGGATCCACTGACCATGTTCTGTACTTATCTTGAGCAGAGCATTACAAGATATGAGAATAATAAAAACTTGCTTGAATCCTGTTTGGATTGGTGGGAGGTGGAAATTAACATTAAGCAGTACTTTACTGGGTCTGTCAAGCGTCGTCCTCAGAGAAACACTTGGGATGAGATGCTGAAACTAAAAGGGTGGCTTTCTTCCCAAATATTTAAAGAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCAGTTCAAGAATACATGCATCCCCTCTGCGGTCTTCTGAATTTAGCTGCAAATTTGCCACATGGGAGTGCAAAACATGACATTGGGCCATATGTCTACATTTCTTATGGCTCTGCTGACAAAGAAACTGATTCAGTGACAAAGCTCTGCTATGACTCATATGATGTGGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTACAGAACAACTTACAAAAATAAGAAAACTGCTAAAAAAGCACAAAACTCTGTGTCAAATGGAGACTATTGCTACTGAGGAGCCACGGGAACAGAAATTGAATGGAATGGCATTATTGCATGATCCAGAAACAGAGCGAAAAGGCTCATGGAGTATGGTCGAAGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAGCTAAAAAAGTTTCTAGTCAGAGCATGGACAGCAATGGAGAATGTGATTTCATTTCTGATTCTGATTCTGGATCCACTTTACTTCTCCTTGGGACTGTTCAAACTGCTGAATTGTCAAAGCACAATAATCCTAGAAATCCCTTTGAAAGCTCAAAAAGACATAAAAAAAAGTTTACTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTTCCAAAGCTCATCGAATACCTTAAAAGACATTATGCTGAATTTTCTTATACCAATGACTATGACAAGAAGATGGTTCATCCAATTCTAGATCAGAGCATTTTTCTTGACAGTACTCACAAAAAGAGACTAAAGGAGGAATTTAAGATTGAACCATGGACTTTTCAGCAACATGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAGGAATTCTAAGTCTAGCGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACTGAGGGTATCCAGTTGATTGATGAGGTCCGACTATTGCCTGAAGACCATAAAGCAAAAGCAGACCTGCTGGAGGTAAAGAAAATGGCGCTTCATAGCATGAATACAGCAATTAAAGAAGTACGTCAGCTTACAAGCAAAACATGA 3144 0.4214 MSKTPKEKETEEPLPDHLRCGRTDGRQWRCRRRVKENLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKSNNNNNNNNNEEEEEEEEEKPEPDKKNVLDDNVESRARRTSRIVKKKRMLSEDSDASASSPPARKKALKQGDMQLELLRMVLKREAEKNKNKSKSKNKKNNNKKKNKKKEKRRKEEKEELCYTKEELRRELPNGVMEISPASPTRDYNNVGSHCDVKVGVDSKTVTPRYFRSKNVDRVPAGKLQIVPYGSNLKKGKRKKCHWCQRSESGNLIQCSSCQREFFCIDCVKERYFDAENEIKKACPVCRGTCPCKYCSASQCKDSESKECLTGKSRVDRILHFHYLICMLLPVLKQISEDQNIELETEVKIKGKNISDIQIKQVEFGCSEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCQELSQGKASGAMNSSVFKRPDKMKPCSASENHTLEERATSIGNLTDTSILPEWTNGNGIDSLSCPPTELGGCGKSHLELRSVFPSSWIKEMEAKAEEIVCSYDFPETSDKSSSCSLCFDTDHGTNRYKQLQEAALREDSNDNYLFCPTVMDISGDNFEHFQKHWGKGHPIVVQDALRSTSNLSWDPLTMFCTYLEQSITRYENNKNLLESCLDWWEVEINIKQYFTGSVKRRPQRNTWDEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVQEYMHPLCGLLNLAANLPHGSAKHDIGPYVYISYGSADKETDSVTKLCYDSYDVVNIMTHTTDAPLSTEQLTKIRKLLKKHKTLCQMETIATEEPREQKLNGMALLHDPETERKGSWSMVEEGMNFFRRVNRTSCISTEAKKVSSQSMDSNGECDFISDSDSGSTLLLLGTVQTAELSKHNNPRNPFESSKRHKKKFTEHLGAQWDVFRRQDVPKLIEYLKRHYAEFSYTNDYDKKMVHPILDQSIFLDSTHKKRLKEEFKIEPWTFQQHVGQAVIIPAGCPYQIRNSKSSVHAVLEFVSPENVTEGIQLIDEVRLLPEDHKAKADLLEVKKMALHSMNTAIKEVRQLTSKT* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0505 1047 MobiDBLite consensus disorder prediction 44 139 - -
Gso8g0505 1047 MobiDBLite consensus disorder prediction 153 187 - -
Gso8g0505 1047 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Gso8g0505 1047 SMART cupin_9 682 1010 IPR003347 -
Gso8g0505 1047 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 1046 IPR045109 GO:0032454|GO:0033169
Gso8g0505 1047 SUPERFAMILY Clavaminate synthase-like 581 1033 - -
Gso8g0505 1047 ProSitePatterns TNFR/NGFR family cysteine-rich region signature. 294 335 IPR001368 GO:0005515
Gso8g0505 1047 Pfam WRC 15 56 IPR014977 -
Gso8g0505 1047 Coils Coil 151 188 - -
Gso8g0505 1047 Coils Coil 63 88 - -
Gso8g0505 1047 MobiDBLite consensus disorder prediction 89 107 - -
Gso8g0505 1047 MobiDBLite consensus disorder prediction 161 179 - -
Gso8g0505 1047 MobiDBLite consensus disorder prediction 1 26 - -
Gso8g0505 1047 MobiDBLite consensus disorder prediction 44 66 - -
Gso8g0505 1047 Pfam JmjC domain, hydroxylase 896 987 IPR003347 -
Gso8g0505 1047 PANTHER PROTEIN B160 10 1046 - -
Gso8g0505 1047 ProSiteProfiles JmjC domain profile. 701 1010 IPR003347 -
Gso8g0505 1047 Gene3D Cupin 825 1019 - -
Gso8g0505 1047 Gene3D Cupin 570 815 - -
Gso8g0505 1047 ProSiteProfiles Zinc finger RING-type profile. 268 314 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0505 Gso-Chr8 4671911 4678434 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso8g0505 JmjC 5.3e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0505 K15601 - gmx:100810673 1995.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1608 7 37870999 37877187 Gso8g0505 8 4671911 4678434 GST
Gso8g0505 8 4671911 4678434 Gso15g0573 15 5067769 5073483 PCT
Gso8g0505 8 4671911 4678434 Gso11g2724 11 43188624 43194546 PCT
Gso15g0573 15 5067769 5073483 Gso8g0505 8 4671911 4678434 PCT
Gso11g2724 11 43188624 43194546 Gso8g0505 8 4671911 4678434 PCT