Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0500 ATGAGCGATGAAGAAGCATTCGCCGAAGCTTCGGGTCTCCGGCGAGCGGTGGAGCTAATCTTTTCAGTGCTCTCTCTCTCGTACCCGATTCGCGTCTTCTCCGGAAAATGGCAGCTGATTCGGGCCAAGTTGGAGGAGCTTCACGCCGGCCTAATCGCCGCCGAGAAATGCGACTCCGGCGAGAGCCCGTCCCTCTCGCGGCTGGCTGCGGCGGTGGTGGCCACCGCGACGGAGTGCCACGATCTGTGCCGGCGTTGCGTGGTTTTCTCATACAGCGGAAAGCTTCTGTTGCAGAGCGATTTGGACGTGGCGTTCGCGAAGCTCGATGCACACGCGAAGAAGCTCAACGAGATATACAAGACTGGAATTTTAACTAATGGGTTCGCGTTGGTGGTTTCAAAACCGAGTCTTGCCGCTTCCAAAGAGGACATGAGGTTCTACGTGAGGGACTTAACGACGAGGATGAAGGTTGGGGATTTGGGTATGAAGCGACAAGCGCTGAAGAATCTTCTGGAAGTTGTGGTGGAGGATGAGAAGTACGTGAAGGTGATTGTTGATGTTGGTGACGTGGTTCATTTGTTGGTGGGGTTTTTGGGATCAAATGAGGTTGAGATTCAGGAGGAGAGTGCTAAGGTTGTTTCTGTTGTTGCGGGGTTTGATTCTTACAAAGGGGTTTTGATTGGCGCGGGTGTAATTGCTCCTTTGGTTAAGGTTTTGGATTGTGGGAGTGTGTTAGGTAAGGTTGCGGCTGCAAGGTGTTTGGTGAAGTTAACTGAGAATTCGGATAATGCTTGGTGTGTTTCTGCTCATGGAGGGGTTAGTGTGTTGTTGAAGATTTGTGGTGGTGATTGTGGTGGTGATTTGGTTGGACCTGCTTGTGGGGTGTTGAGGAATCTCGTTGGTGTCGAGGAGATTAAGAGGTTTATGGTTGATGAGGGTGCTGCGGTAACATTCATTAGGCTTGTGAGGTCTAAGGAGGAATCGATTCAGGTGAATTCGATAGCGTTTATTGTGAGTATTGCATCTGGTGATGAGGTTGTTAGGCAGATGGTGATCAAAGAGGGAGCGATTCACGCTTTGTTGCGCGTTTTGGATCCTAAGTGGTCTTATTCTTGTAAAACAAGGGAGGTGGCAATGAGGGCTATTGAGGATTTGTGTTTTTGCTCACCTAGTTCTGTTGGTGTTTTGATGAGTTATGGCTTTGTGGATCAATTGATATATTATGTTCGAAATGGCGAGGTTTCGATTCAGGAATTGGCATTGAAGGTGGCGTTTAGGTTGTGTGGAACATCGGAGGAGGCCAAGAAAGCAATGGGGGATGCCAGGTTTATGCCGGAGTTTGTTAAGTTTCTCAATGCAAAGTCATTTGAGGTTCGGGAAATGGCAGCGGAGGCACTCTCTGGCATGGTTATGGTGCCTAGAAATAGAAAGAGGTTTGTGCAGGATGATCATAACATAGCCCTTATTCTGCAGTTGCTTGATCCAGAGGAGGGGAATTCAGGTAATAAAAAGTTCTTGATCTCTATATTAATGTCCTTAACTAATTGTACTAGTGGGAGGAAAAAGATTGTTAGTTCAGGATATGCCAAAAACATAGAAAAGCTTGCGGATGCTGAAGTTTCTTCTGATGCCAAGAGACTTGTCAAGAAGCTATCCACAAACCGGTTCCGCAGCATGTTGAGTGGAATCTGGCGCTCGTGA 1701 0.4797 MSDEEAFAEASGLRRAVELIFSVLSLSYPIRVFSGKWQLIRAKLEELHAGLIAAEKCDSGESPSLSRLAAAVVATATECHDLCRRCVVFSYSGKLLLQSDLDVAFAKLDAHAKKLNEIYKTGILTNGFALVVSKPSLAASKEDMRFYVRDLTTRMKVGDLGMKRQALKNLLEVVVEDEKYVKVIVDVGDVVHLLVGFLGSNEVEIQEESAKVVSVVAGFDSYKGVLIGAGVIAPLVKVLDCGSVLGKVAAARCLVKLTENSDNAWCVSAHGGVSVLLKICGGDCGGDLVGPACGVLRNLVGVEEIKRFMVDEGAAVTFIRLVRSKEESIQVNSIAFIVSIASGDEVVRQMVIKEGAIHALLRVLDPKWSYSCKTREVAMRAIEDLCFCSPSSVGVLMSYGFVDQLIYYVRNGEVSIQELALKVAFRLCGTSEEAKKAMGDARFMPEFVKFLNAKSFEVREMAAEALSGMVMVPRNRKRFVQDDHNIALILQLLDPEEGNSGNKKFLISILMSLTNCTSGRKKIVSSGYAKNIEKLADAEVSSDAKRLVKKLSTNRFRSMLSGIWRS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0500 566 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 3 566 - -
Gso8g0500 566 SMART arm_5 177 218 IPR000225 GO:0005515
Gso8g0500 566 SMART arm_5 343 387 IPR000225 GO:0005515
Gso8g0500 566 SMART arm_5 431 471 IPR000225 GO:0005515
Gso8g0500 566 SMART arm_5 219 259 IPR000225 GO:0005515
Gso8g0500 566 SMART arm_5 260 301 IPR000225 GO:0005515
Gso8g0500 566 Gene3D - 147 555 IPR011989 -
Gso8g0500 566 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 3 566 - -
Gso8g0500 566 SUPERFAMILY ARM repeat 154 547 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0500 Gso-Chr8 4600878 4603417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0500 159 361 U-box Gene Family AT2G23140 25.616 3.74e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0500 - - gmx:100809062 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1613 7 37952164 37954662 Gso8g0500 8 4600878 4603417 GST
Gso8g0500 8 4600878 4603417 Gso15g0580 15 5115096 5117284 PCT
Gso8g0500 8 4600878 4603417 Gso11g2719 11 43134416 43136794 PCT
Gso15g0580 15 5115096 5117284 Gso8g0500 8 4600878 4603417 PCT
Gso11g2719 11 43134416 43136794 Gso8g0500 8 4600878 4603417 PCT