Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0484 ATGAACGGGAAAGCCTCCATCTCCAAGGAGCTCAATGCCAAGCACGCCAAGGTGGAAGATGGTCACAGGAAAACCATTCTCATGCTGCCACTCTCACAGCTGATGCTTGGGCACTTGTCTAGTCAATCTATTAGTAAGAGTTCAAGTGTGCAGCCCATACGCACAATTTCCCAGTTATCTTCTCTTTCCCAGTCATGTCGACTAAAAATATTAGAAGGACTTCTTAAGCTGCCTGAGAACAGGGAATGCGCAGACTGCCGGAACAAGGCACCACGATGGGCAAGTGTGAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGTCTTGGAGTTCATATATCAAAGGTGCGGTCTACAACTTTAGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATTAATGGGTAATGAGAAGTCAAATAAGCACTGGGAGGAAAAAATTCCACCAAATTTTGATAGAAGTAAATTGGGAATTGAGAAGTTTATCCGTGACAAGTATGTGGAGAAAAGATGGGCTTCAAAAGAAGAACTGCAATCAACTTCAAGGACAGGTGAAATAATCTATAACTTTGATGAGTCACAAAATGGAGGGGCTAGGAGTGGTATTCTGAAGAACAACAGGAGACTTTCTCTTGAAGAAAGTATTCTTGCTAACCACGTGGCACAAATTCTACCTCCAATAACAAGATCTCGTGGGGGTTTTACTTTTATAGACACGCAAAAGAAGAATTCACCTCCATTAAAAAGGCCATCCTCATCAGTTGATTTTGACAAGTCCACAGGAAAGAGCAATGGCACTGGTGACATTTTCAACTTGCTTTGCATCTATGATGATAACCAGAACTTCTCAACCATGCCTCCTTCAAGTTGGGCAACATTTGATTGA 900 0.42 MNGKASISKELNAKHAKVEDGHRKTILMLPLSQLMLGHLSSQSISKSSSVQPIRTISQLSSLSQSCRLKILEGLLKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLMGNEKSNKHWEEKIPPNFDRSKLGIEKFIRDKYVEKRWASKEELQSTSRTGEIIYNFDESQNGGARSGILKNNRRLSLEESILANHVAQILPPITRSRGGFTFIDTQKKNSPPLKRPSSSVDFDKSTGKSNGTGDIFNLLCIYDDNQNFSTMPPSSWATFD* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0484 299 Pfam Putative GTPase activating protein for Arf 70 179 IPR001164 GO:0005096
Gso8g0484 299 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 299 IPR044520 GO:0005096
Gso8g0484 299 PRINTS HIV Rev interacting protein signature 80 99 IPR001164 GO:0005096
Gso8g0484 299 PRINTS HIV Rev interacting protein signature 99 116 IPR001164 GO:0005096
Gso8g0484 299 PRINTS HIV Rev interacting protein signature 120 141 IPR001164 GO:0005096
Gso8g0484 299 CDD ArfGap 71 171 - -
Gso8g0484 299 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 299 - -
Gso8g0484 299 MobiDBLite consensus disorder prediction 241 265 - -
Gso8g0484 299 SUPERFAMILY ArfGap/RecO-like zinc finger 69 178 IPR037278 -
Gso8g0484 299 SMART arf_gap_3 69 181 IPR001164 GO:0005096
Gso8g0484 299 Gene3D Arf GTPase activating protein 54 185 IPR038508 -
Gso8g0484 299 ProSiteProfiles ARF GTPase-activating proteins domain profile. 68 184 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0484 Gso-Chr8 4463903 4472185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0484 74 189 C2H2 Transcription Factor Family AT4G05330 45.082 2.84e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0484 K12486 - gmx:100803735 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0484 8 4463903 4472185 Gso16g1727 16 37824578 37828788 PCT
Gso8g0484 8 4463903 4472185 Gso9g1365 9 37449323 37453260 PCT
Gso16g1022 16 28028277 28033621 Gso8g0484 8 4463903 4472185 PCT
Gso16g1727 16 37824578 37828788 Gso8g0484 8 4463903 4472185 PCT
Gso9g1365 9 37449323 37453260 Gso8g0484 8 4463903 4472185 PCT