Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0482 ATGGAGTACGGTAGCGGAGGCGGTGGGTCACAGTCCCCAGGGGAGCAAGATGGCTCAGATTCCCAAGAGAGGAGGAAGCGCTATCATCGTCATACTGCCAATCAGATTCAGAGGCTTGAGTCAATGTTCAAAGAGTGCCCCCATCCGGATGAGAAACAAAGGTTGCAATTAAGCAGGGAGTTAGGCCTGGCCCCGAGGCAGATCAAGTTCTGGTTCCAAAATAGGAGGACCCAAATGAAGGCCCAACACGAAAGAGCTGACAATTGTGCTCTTCGAGCTGACAATGACAAGATACGTTGCGAGAACATAGCCATCAGGGAGGCCTTGAAGAATGTTATCTGCCCTTCTTGTGGTGCCCCACCTCTCAATGACGATTGTTATTTTGATGACCAAAAGTTGCGATTAGAGAACGCCCACCTCAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAATGGCGAGTTATGGAAACCAAGGGATGGTTGGTCCTGCTCCTTCTTCCCTTAATCTTGATCTTCTTCCTGCTGCAGGGACTTCCTCATCATCCATGCCTTATCATCCCCCTTGCCTTTCGGACATGGACAAGTCCCTCATGTCAGACATTGCTTCCAATGCCATGGAAGAATTTCTAAGGCTCGTGCAGACAAACGAACCCTTGTGGCTTAAATCAAACGTCGATGCTAGAGATGTTCTTAGTTGTGATGCCTACGAAAGAATGTTCCACAAGCCCAATACTCGCCCCAAGAATCCTAACGTTCGCATTGAAGCATCCCGAGATTCTGGAGTTGTATTAATGAATACTTTAGCTTTGGTTGATATGTTTATGGACCCAAACAAGTGGATACAACTTTTTCCCACTATTGTCTCTGTGGCAAGGACTATTCAAGTCATATCTTCTGGGATGATGGGCAGTTGCAGTGGTTCTTTACAATTGATGTATCAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCAACTCGGGAGTTTTACTTCCTGCGTTACTGTCAGCAAATTGAGCAGGGAACATGGGCAGTAATGGACGTTTCTTATGATTTTCCCCAAGATAGCCACTATGCTCCTCAATTTCGGTCTCATCGTTGTCCTTCTGGTTGCTTGATCCAGGACATGCCTGATGGGCATTCCAAGATTACTTGGGTTGAACACGTAGAGATTGAAGATAAGACTCTTCCTCACCGGCTTTATAGAAATCTTATTTATAGTGGGATGGCATTTGGAGCTGAAAGATGGCTTACTACCCTCCAGAGGATGTGTGAAAGACTTACTTATCTGATGGCTACAAGCAATCCTACCCGGGATAATCTAGGAGGAGTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCAATTTTTGTGCCAACATTAGCACATCAAGTGGCCATCGATGGACCACGCTCTCTGGATTGAATGAAATCGTAGTAAGAGTCACTGTCCACAAAAGCTCAGATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACTATTTGGCTCCCCACCCCTCCTCACGCTGTCTTTAATTTCTTCAAGGATGAAAACAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGAGCTTTCAACAACAGTACTCAGAACATGTTAATACTACAAGAAAGCTGCATAGATTCCTATGGTTCATTTGTGGTTTATTGCCCAGTTGATCTGCCATCCATCAACTTAGCAATGAGTGGTGAAGACCCTTCATACATTCCCCTACTACCAAATGGATTTACCATTTTGCCTGATGGTCAGCCTGACCAGGAAGGAGATGATGGAGCATCAACCAGCTCTAACAACGCAAACAGGAATATAGTAAGGTCTGGTGGTTCACTAGTTACAATTGCATTCCAAATTCTTGTGAGCAGCTTGCCATCTGCTAAACTCAATATGGAGTCGGTGACAACTGTTAACAATCTTATTGGCTCCACTGTCCAGCAAATAAAGTCTTCCTTAAGTTGTCCTACCCTACCTAGCTAG 2166 0.4534 MEYGSGGGGSQSPGEQDGSDSQERRKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRADNDKIRCENIAIREALKNVICPSCGAPPLNDDCYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMASYGNQGMVGPAPSSLNLDLLPAAGTSSSSMPYHPPCLSDMDKSLMSDIASNAMEEFLRLVQTNEPLWLKSNVDARDVLSCDAYERMFHKPNTRPKNPNVRIEASRDSGVVLMNTLALVDMFMDPNKWIQLFPTIVSVARTIQVISSGMMGSCSGSLQLMYQELQVLSPLVSTREFYFLRYCQQIEQGTWAVMDVSYDFPQDSHYAPQFRSHRCPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLTTLQRMCERLTYLMATSNPTRDNLGGVISSPEGKRSMMKLAQRMVTNFCANISTSSGHRWTTLSGLNEIVVRVTVHKSSDPGQPNGVVLSAATTIWLPTPPHAVFNFFKDENKRPQWDVLSNGNAVQEVANIANGLHPGNSISVLRAFNNSTQNMLILQESCIDSYGSFVVYCPVDLPSINLAMSGEDPSYIPLLPNGFTILPDGQPDQEGDDGASTSSNNANRNIVRSGGSLVTIAFQILVSSLPSAKLNMESVTTVNNLIGSTVQQIKSSLSCPTLPS* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0482 721 SMART HOX_1 23 86 IPR001356 GO:0003677
Gso8g0482 721 MobiDBLite consensus disorder prediction 1 30 - -
Gso8g0482 721 Pfam START domain 226 450 IPR002913 GO:0008289
Gso8g0482 721 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Gso8g0482 721 CDD homeodomain 24 83 IPR001356 GO:0003677
Gso8g0482 721 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Gso8g0482 721 SUPERFAMILY Homeodomain-like 7 82 IPR009057 -
Gso8g0482 721 MobiDBLite consensus disorder prediction 643 664 - -
Gso8g0482 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 716 IPR042160 -
Gso8g0482 721 CDD START_ArGLABRA2_like 220 449 - -
Gso8g0482 721 Gene3D - 224 450 IPR023393 -
Gso8g0482 721 SUPERFAMILY Bet v1-like 471 711 - -
Gso8g0482 721 ProSiteProfiles START domain profile. 216 453 IPR002913 GO:0008289
Gso8g0482 721 Gene3D - 11 95 - -
Gso8g0482 721 SMART START_1 225 450 IPR002913 GO:0008289
Gso8g0482 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 716 - -
Gso8g0482 721 SUPERFAMILY Bet v1-like 217 451 - -
Gso8g0482 721 Pfam Homeodomain 25 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0482 Gso-Chr8 4446479 4451145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0482 20 718 Homeobox Transcription Factor Family AT1G73360 63.210 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso8g0482 START 2.9e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0482 K09338 - gmx:100796808 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2122 5 44145133 44149053 Gso8g0482 8 4446479 4451145 GST
Gso8g0482 8 4446479 4451145 Gso16g1745 16 38028128 38033276 PCT
Gso8g0482 8 4446479 4451145 Gso9g1385 9 37732888 37737565 PCT
Gso16g1745 16 38028128 38033276 Gso8g0482 8 4446479 4451145 PCT
Gso9g1385 9 37732888 37737565 Gso8g0482 8 4446479 4451145 PCT