Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0478 ATGATCGACATGTTAGTGATCCATAACTCATTACCTCCCACTTCTGAGGCCGAGAATGGTACTGCTGCTACTGCCACTAATAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTAGTGTCCCTCTCACCCAAAACCTTGCTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTTCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGGCACAAGGTGCCATGGAAGCTGTTGAAGAGGGAAACTACAGCGGTGGTGAAGAAGCGAGTGTTTGTATGCCCGGAGCCTAGTTGTTTGCACCATGACCCATGCCATGCTCTGGGTGATCTTGTCGGCATAAAGAAGCATTTCAGAAGGAAACACAACAATCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTATGCGGTGCAGTCTGATTACAAAGCACATCTCAAAACTTGTGGCACCCGAGGACACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAGCACCAAGACGCGTGCAACGTAGGGAGGCTGGGGCCAGAAACACAATCACAGGCACAGGCAGTGCAAGCAGCTGCATGCTTGTCTCGAACAGCTTCAAGCGAAACCAATTTCAGCACTGGTTCCCCTTGGCCACAAAGCGGTACTATAATAATTCCAAATCCCACCGTTACGGTAGTAGAACCCTCCTCATACACCATTGTCACTGCCGAAACCAACAACAAAGTCCACCCCAACCTGGAGCTTCAGCTCTCTAATACCACTCCTACTGCATCATCACAGGAAGAAAGGGTTCATCAAGAGCAGTTGAGGATTGCGAAGGCGAAGAAAGCGTTGGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAAATCGAACTGGCCGAACTTGAGTTCACTAACGCCAAGAGGATAAGACAAGAAGCGCTTGCGGAACTTGACAAAGCCTATGCCTTCAAGGACCATGCAATCAAACACATCAATTCAATCATGCTTCAAATCACTTGCCGAGCTTGCAAGCACCATTTTCATTCGCCAACCGACGACCAAATCTTCTCCTACATAACACAAGCTCGCCAAGTACAAAAACATCGTCTCAAACCCATTATTAATTAA 1143 0.4899 MIDMLVIHNSLPPTSEAENGTAATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTAVVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHNNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQSQAQAVQAAACLSRTASSETNFSTGSPWPQSGTIIIPNPTVTVVEPSSYTIVTAETNNKVHPNLELQLSNTTPTASSQEERVHQEQLRIAKAKKALAEEARKQAKRQIELAELEFTNAKRIRQEALAELDKAYAFKDHAIKHINSIMLQITCRACKHHFHSPTDDQIFSYITQARQVQKHRLKPIIN* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0478 380 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Gso8g0478 380 Gene3D Classic Zinc Finger 35 99 - -
Gso8g0478 380 PANTHER OS03G0310200 PROTEIN 269 358 IPR039288 GO:0009630
Gso8g0478 380 PANTHER OS03G0310200 PROTEIN 13 273 IPR039288 GO:0009630
Gso8g0478 380 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Gso8g0478 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Gso8g0478 380 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Gso8g0478 380 SMART c2h2final6 99 129 IPR013087 -
Gso8g0478 380 SMART c2h2final6 57 79 IPR013087 -
Gso8g0478 380 SMART c2h2final6 135 162 IPR013087 -
Gso8g0478 380 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 13 273 - -
Gso8g0478 380 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 269 358 - -
Gso8g0478 380 MobiDBLite consensus disorder prediction 12 26 - -
Gso8g0478 380 Coils Coil 268 321 - -
Gso8g0478 380 Gene3D Classic Zinc Finger 120 201 - -
Gso8g0478 380 MobiDBLite consensus disorder prediction 8 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0478 Gso-Chr8 4389027 4391041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0478 18 367 C2H2 Transcription Factor Family AT2G01940 54.479 4.18e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso8g0478 zf-C2H2 0.0035 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0478 K25871 - gmx:100795754 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2118 5 44085809 44087984 Gso8g0478 8 4389027 4391041 GST
Gso8g0478 8 4389027 4391041 Gso7g0913 7 10588872 10592551 PCT
Gso8g0478 8 4389027 4391041 Gso9g1400 9 37994091 37997756 PCT
Gso7g0913 7 10588872 10592551 Gso8g0478 8 4389027 4391041 PCT
Gso9g1400 9 37994091 37997756 Gso8g0478 8 4389027 4391041 PCT