Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0477 ATGGAAGGAGGATCGGGTGGTGGCGAGAGAGAGAAGTGGAACAGTGTAAGTGTATACAGAGAGTGCTTGAGAAACCATGCAGCCAGCCTCGGAAGCTACGCCACGGACGGGTGCGGCGAGTTCACGGTGGACGGCGCGGGGGGACTACAATGCGCGGCGTGCGGCTGCCACCGCAACTTCCACCGGAAAGTGAAGTACCCGGTGGCGGAGCATGAGGAGTATGGAGGCAAGAAGCGGTTCAGGTCCAAGTTCACGGCAGATCAGAAGGAGAAGATGCTGGGGTTTGCGGAGAAGCTTGGTTGGAAGCTTCAGAGGAAGGATCTGAATGATGAGATAGAGAGGTTTTGCCGGAGCGTTGGGGTTAGTAGGCAAGTCTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCCTCCTCCTCCTCCTCTACCCCCGCCAATGTCTCCTCCCTCACCCAATGA 459 0.5599 MEGGSGGGEREKWNSVSVYRECLRNHAASLGSYATDGCGEFTVDGAGGLQCAACGCHRNFHRKVKYPVAEHEEYGGKKRFRSKFTADQKEKMLGFAEKLGWKLQRKDLNDEIERFCRSVGVSRQVFKVWMHNHKNSSSSSSSTPANVSSLTQ* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0477 152 MobiDBLite consensus disorder prediction 133 152 - -
Gso8g0477 152 Pfam ZF-HD protein dimerisation region 18 64 IPR006456 -
Gso8g0477 152 Gene3D - 67 141 - -
Gso8g0477 152 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 63 IPR006456 -
Gso8g0477 152 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 77 135 IPR006455 -
Gso8g0477 152 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 17 143 - -
Gso8g0477 152 SUPERFAMILY Homeodomain-like 71 135 IPR009057 -
Gso8g0477 152 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 143 - -
Gso8g0477 152 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 64 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0477 Gso-Chr8 4375369 4379454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0477 19 136 ZF-HD Transcription Factor Family AT4G24660 42.857 2.48e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso8g0477 ZF-HD_dimer 3.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0477 - - gmx:100801620 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2117 5 44074116 44074951 Gso8g0477 8 4375369 4379454 GST
Gso8g0477 8 4375369 4379454 Gso7g0910 7 10552336 10553402 PCT
Gso8g0477 8 4375369 4379454 Gso9g1403 9 38037546 38038331 PCT
Gso7g0910 7 10552336 10553402 Gso8g0477 8 4375369 4379454 PCT
Gso9g1403 9 38037546 38038331 Gso8g0477 8 4375369 4379454 PCT