Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0470 ATGAGTTCGAAAGAGCGAAGCCAGCAGCCGCATTCGAGGGTTCCTCGTCGTCAGGAGTGGATTCGTAGAGATGTTGGTGGTTGCTCCAATCCAAGAAAGCCCAAGAAGGGATCATCTTCGAATTCGAGGGAGGAGTCTAATTTGCCTCAGCTGCTGCAAGAGATTCAGGACAAGCTCGTCAAAGGAGCTGTCGAATGCATGATTTGTTATGACATGGTGCGCAGGTCTGCGCCTATCTGGTCTTGCTCCGGTTGCTTCTCTATCTTTCACCTCACTTGTATCAAGAAGTGGGCTCGTGCACCCATTTCTGTGGATTTGTCCGTTGAGAAGAACCAGGGCGGCTTCAATTGGCGTTGCCCTGGTTGCCAGTCTGTGCAGCTCACTTCATCCAAGGATATTAGGTATCTATGCTTCTGTGGAAAGAGGCCAGATCCACCCTCTGATTTGTATCTCATGCCACATTCCTGTGGAGAACCATGTGGCAAGCCTCTTGAGAGGGACCTTCAAGGGGATAAGGAGCTTCTTTGCCCTCATCTTTGTGTCTTGCAATGCCATCCCGGCCCCTGTCCTCCTTGCAAAGCATTTGCCCCTCCACGTCTGTGTCCTTGTGGGAAGAAAAATATTACCACTCGTTGCTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGCCAAAAGCTTCTTCAATGTGGCCGTCATCGCTGTCAGCAAATCTGTCATCTGGGTCCTTGTCATCCTTGTCAAGTTCCAATCAATGCCTCTTGCTTTTGTGCCCAAAAGATGGAGGTAATTCTTTGTGGGGAGATGGCTGTCAAGGGTGAAATCAGAGCAGATGGTGGAGTATTCTCTTGTGGTTCCACTTGTCAAAAGAAACTTAATTGTGGTAATCATATCTGTATCGAGACTTGTCATCCAGGTAGCTGTGGGGACTGTGAATTATTACCATCCCGTATTAAGACATGCTGTTGTGGGAAAACTAGATTGGAGGAGAAACGCCACAGTTGTTTAGACCCAATTCCTACCTGTTCACAAGTATGTGGCAAGTACCTTCCTTGCGGGATTCATCATTGTGAAGAGCCATGCCATGCTGGGGATTGTTCTCCTTGTCTGGTTCTAGTTTCTCAGAAGTGTAGATGTGGCTCGACTTCCCGAACTGTGGAGTGTTGCAAGACAAAAATGGAAAATGAGAAATTTACTTGTGAAAGGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCACTTTCTAATCCAAATAATATTCTAAATGCAGATTGGGATCCACACTTCTGTCAATTGCCGTGTGGAAAGAAGTTAAGGTGTGGGCAGCATGCATGTGAATCCCTGTGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGTAAGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCGCCTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTTCGCATCCAGCCTCTCACAGCTGTCATTTTGGAGATTGCCCTCCTTGTTCAATGCCCATAGCAAAAGAATGTATTGGTGGACATGTAGTTCTTAGGAACATACCTTGTGGTTCGAAGGATATTAAATGCAATAAACTCTGTGGGAAGACCAGACAGTGTGGTTTACATGCATGTGGCAGAACATGTCACCTCCCCCCTTGTGATAATCTGTCAGCTGTGCCAGGTATCCGAGCCTCTTGTGGGCAAACATGTGGTGCTCCTAGGAGAGACTGCCGGCATACATGTACAGCTCCTTGTCACCCTTCAACTCCATGTCCAGATACAAGATGCAAATTCCCTGTCACAATTACTTGTTCTTGTGGCCGAATAACAGAAAATGTTCCTTGTGATGCTGGTGGCAGTTGTGCTAATTATAATGCTGATACTGTACATGAAGCTTCCATTATTCAAAAGTTGCCTGTGCTTCTTCAACCCGTGGCTGCAAATGGCAAAAAAGTCCCCCTCGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAGCGGAAAAGGGTTCTTGCAGATGCTTTTGAGATTACCGCTCCAAATCTGGATTCACTCCATTTTGGTGAGAATTCAGTTGCTTCTGAATTGCTGGCTGACATGTTGAGACGTGATTCTAAATGGGTTTTATCTGTTGAAGAGAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGAAATGCACATGGTCCAAAAGTCCATGTTTTCTGTCCTATGTTAAAGGACAAAAGAGATGCAGTGAGGGTGATTGCTGAGAGATGGAAGCTTGCAGTGAATGCAGCTGGTCGGGAGCCAAAGCATTTCGTAGTTGTTCATGTTACCCCAAAATCAAGAGCTCCTGCTCGTGTGCTAGGGTTTAAGGGTACTACAACTGTAAATGTACCCCTTCCTCCGGCATTTGATCCTTTGGTTGATATGGATCCTCGACTTGTTGTCTCTTTTATAGACTTACCAATGGATGCAGATATTAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCATTGGCCGTTTTTAATGACCCTGCCCGTGCTGCAACTGCAATGAGGAGGTTGGATCATGGTACGGTTTATCAGGGAGCTGTGGTGGTGGTTGTTCCAAATGTCGGGGCATCAGTAGCATCTTCAGCTACCAATGCCTGGGGAGGATCTGGGACAATGAAAGGAGGAGCACTGGCAGCATTAAAGAGTAATCCATGGAAAAAGGATGTTATTCAAGAGCCAGGTTGGAGAGAAGATGCTTGGGGTGATGAGGAGTGGGCTACTGGTTCTGCTAATGTCAAATTGCCTATTCAGAAGAAAGAAGCCCGAATATCTGCTTCAGTAAATCCTTGGAGTGTCCTAAATCAAGAATCGTCTTCAAGTTCATCTGTTGCAGCCATTAAAATTGATGGTTCTAGGAAACACTCTGAAAGTAGTGTTATCACAAAGTTGGAGCCTCGTGATGGTGGTTCAAATCTAGGAGGGCAGCCTGCAGGAAACTTTGATGCTTTGGAAGCTTCTGATGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG 3132 0.4604 MSSKERSQQPHSRVPRRQEWIRRDVGGCSNPRKPKKGSSSNSREESNLPQLLQEIQDKLVKGAVECMICYDMVRRSAPIWSCSGCFSIFHLTCIKKWARAPISVDLSVEKNQGGFNWRCPGCQSVQLTSSKDIRYLCFCGKRPDPPSDLYLMPHSCGEPCGKPLERDLQGDKELLCPHLCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQRCQKLLQCGRHRCQQICHLGPCHPCQVPINASCFCAQKMEVILCGEMAVKGEIRADGGVFSCGSTCQKKLNCGNHICIETCHPGSCGDCELLPSRIKTCCCGKTRLEEKRHSCLDPIPTCSQVCGKYLPCGIHHCEEPCHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKMENEKFTCERPCGQKKNCGRHRCSERCCPLSNPNNILNADWDPHFCQLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSMPIAKECIGGHVVLRNIPCGSKDIKCNKLCGKTRQCGLHACGRTCHLPPCDNLSAVPGIRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDTRCKFPVTITCSCGRITENVPCDAGGSCANYNADTVHEASIIQKLPVLLQPVAANGKKVPLGQRKLMCNDDCAKLERKRVLADAFEITAPNLDSLHFGENSVASELLADMLRRDSKWVLSVEERCKFLVLGKSRGNAHGPKVHVFCPMLKDKRDAVRVIAERWKLAVNAAGREPKHFVVVHVTPKSRAPARVLGFKGTTTVNVPLPPAFDPLVDMDPRLVVSFIDLPMDADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVVVVVPNVGASVASSATNAWGGSGTMKGGALAALKSNPWKKDVIQEPGWREDAWGDEEWATGSANVKLPIQKKEARISASVNPWSVLNQESSSSSSVAAIKIDGSRKHSESSVITKLEPRDGGSNLGGQPAGNFDALEASDVVDDWEKACE* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0470 1043 MobiDBLite consensus disorder prediction 1 30 - -
Gso8g0470 1043 CDD NF-X1-zinc-finger 586 635 - -
Gso8g0470 1043 MobiDBLite consensus disorder prediction 33 47 - -
Gso8g0470 1043 MobiDBLite consensus disorder prediction 1 47 - -
Gso8g0470 1043 Pfam NF-X1 type zinc finger 353 370 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 Pfam NF-X1 type zinc finger 449 466 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 Pfam NF-X1 type zinc finger 559 574 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 Pfam NF-X1 type zinc finger 231 249 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 Pfam NF-X1 type zinc finger 295 312 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 Pfam NF-X1 type zinc finger 590 616 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 Pfam NF-X1 type zinc finger 513 523 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 Pfam NF-X1 type zinc finger 178 193 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 Pfam NF-X1 type zinc finger 411 422 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 SUPERFAMILY RING/U-box 57 126 - -
Gso8g0470 1043 ProSiteProfiles Zinc finger PHD-type profile. 63 125 IPR019787 -
Gso8g0470 1043 ProSiteProfiles Zinc finger RING-type profile. 66 123 IPR001841 -
Gso8g0470 1043 SMART znfxneu3 411 441 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 SMART znfxneu3 449 468 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 SMART znfxneu3 353 372 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 SMART znfxneu3 597 618 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 SMART znfxneu3 295 314 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 SMART znfxneu3 506 524 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 SMART znfxneu3 231 250 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 SMART znfxneu3 559 588 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 SMART znfxneu3 176 194 IPR000967 GO:0005634|GO:0008270
Gso8g0470 1043 CDD NF-X1-zinc-finger 156 214 - -
Gso8g0470 1043 CDD NF-X1-zinc-finger 439 482 - -
Gso8g0470 1043 CDD NF-X1-zinc-finger 343 391 - -
Gso8g0470 1043 MobiDBLite consensus disorder prediction 1001 1043 - -
Gso8g0470 1043 CDD NF-X1-zinc-finger 285 338 - -
Gso8g0470 1043 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 2 1040 - -
Gso8g0470 1043 CDD NF-X1-zinc-finger 221 269 - -
Gso8g0470 1043 CDD RING-CH-C4HC3_NFX1 65 123 - -
Gso8g0470 1043 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 2 1040 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0470 Gso-Chr8 4336444 4340852 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Gso8g0470 zf-NF-X1 0.00017 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0470 K12236 - gmx:106799700 2231.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2110 5 44022871 44024391 Gso8g0470 8 4336444 4340852 GST