Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0444 ATGGCTTCAAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGATACCACAGTGGGTGAAGCTTCTGGTCAAGCAGTGACAAGCAGGTACCTGCAGGATAATGCAAGTGACAGTGATGACTCTGATGGCCAAAAGCGCGTTGTGAGGTCTGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAATGATTGGGTGAGCTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAGGTCATGCGTGTCACTGAGTCTGAAAGGGTCCCCAATCTTTACATCAAGGCTCTCGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGCAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGACTTGATTAATAAGTGCAGGGAGAACCCTGAGAGCGAGGAGGAAAAAGAAGAAGAGGAGAGCGATGAAGAGTATGACAGTGATGGTGAGATTATTGATCCGGATCAGCTTCAAAAACCAGAAGCAAAATCTGATTCGGAAGCCTCTCAATATGAAGATGAAAAGCCAGATGCTGGTGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGGCTTTTGGATAGACAGTTCATGAAAAACCCTAGTGAGATCACGTGGGATGCGGTTAACAAGAAGTTTAAAGAGGTTGTGGCTGCCAGGGGAAGAAAGGGAACTGGTAGGTTTGAACAGGTTGAGCAGCTCACCTTCTTAACAAAAGTTGCTAAGACACCTGCACAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCGGGCCTCAATGGGCATATGCCCATCAATGTATGGAAAAAATGTGTACAGAACATGCTGATCATTCTTGATATTTTGGTGCAGTACCCAAACATAGTGGTTGATGATTCCGTGGAACCGGATGAGAATGAAACTCAGAAAGGTGCTGAACATAATGGAACAATTCGGGTTTGGGGTAACTTAGTTGCTTTTTTAGAAAGAATTGATGTCGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACGCGTGACTATGTTGAGAGACTTAGGGATGAGCCCACGTTTCTGGTTCTTGCCCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCTTCTAAGGTTGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCCCAAGAGGTTTATGATGCCATGAGAAAATTGACTGAATTGACAGAAGATGGAGATAATGGAGGGGAGGCAAGTGAGAAGGAATTTGAGGAATCAAGGATTCCTACTGCATTTGTAGTTACCCCAGAGGTTGTTACACGGAAGCCCACCTTCCCTGAGAATAGCAGGACCCTAATGGATATATTGGTATCTATGATATACAAATATGGAGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATATCATCATGCTCTTCTTGATGAGTTTTCAATAGCCCGTGATCTGCTTCTTATGAGCCATTTGCAAGACAGTGTTCAGCATATGGACATTTCAACGCAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTGGCACAAGGCGTTTCACAAAGTCGTTATCATGAGAAGACTCCTGAACAGGAAAGGTTGGAAAGAAGACGACAGATGCCGTATCATATGCACATCAATCTAGAGCTCCTAGAGGCAGTACATCTCGTATCTGCTATGCTGCTGGAAGTGCCCAATATGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAGACTTTCCGTCGCTTGCTTGAGGTAAGTGAGAAACAAACATTTACTGGTCCACCGGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGGTTCTTCGCAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGACACGGTACTTGAAATGCTAAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTTTCTTCATCTTATGAATCGTTGAGCCTGGATCAGCTCACAAAATTTTTTGATCTCTCTGTTTCGCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTCTTTTCCAAGATGTCGAACACTCCAGGCTGCAGGCATTGGTATTCCAATTGACAGAGAAATTATCTGTCCTTGCAGAGAGTAATGAAAAAGCAACCGAGGCCAGGGTAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCTGCCGCCGCTGCTGCCGGCAGTGGAACAGCCTCTACAGGTGGTAGGTGGCAAGACCTGTCCCCTTCTCAGCCAAGGCAAGGCAGTGGGCGTGCAGGGTATGGTGGAAGACCAATGACATTAGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGAGGAAGAGGTTCGTATGGAGGTTCAGGGAGGACTTCTCAAAGGGGTTCAGCATTGAGGGGACCCCAGGGCGATGGACCTGCTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTGA 2781 0.4585 MASRFWTQGGSDSEEEESDYDEEVDTTVGEASGQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESERVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEEEKEEEESDEEYDSDGEIIDPDQLQKPEAKSDSEASQYEDEKPDAGEGPWDQKLSKKDRLLDRQFMKNPSEITWDAVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLIILDILVQYPNIVVDDSVEPDENETQKGAEHNGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGEASEKEFEESRIPTAFVVTPEVVTRKPTFPENSRTLMDILVSMIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLRKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKFFDLSVSRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALVFQLTEKLSVLAESNEKATEARVGGGGLDLPLRRRDGQDYAAAAAAGSGTASTGGRWQDLSPSQPRQGSGRAGYGGRPMTLGQAAGSGYSRGRGRGSYGGSGRTSQRGSALRGPQGDGPARMVSLKGVRA* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0444 926 Pfam PCI domain 658 786 IPR000717 -
Gso8g0444 926 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 869 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso8g0444 926 SUPERFAMILY "Winged helix" DNA-binding domain 714 789 IPR036390 -
Gso8g0444 926 MobiDBLite consensus disorder prediction 175 193 - -
Gso8g0444 926 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 925 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso8g0444 926 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 719 807 - -
Gso8g0444 926 MobiDBLite consensus disorder prediction 12 26 - -
Gso8g0444 926 MobiDBLite consensus disorder prediction 155 174 - -
Gso8g0444 926 MobiDBLite consensus disorder prediction 135 154 - -
Gso8g0444 926 MobiDBLite consensus disorder prediction 837 926 - -
Gso8g0444 926 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 650 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso8g0444 926 MobiDBLite consensus disorder prediction 45 63 - -
Gso8g0444 926 MobiDBLite consensus disorder prediction 194 229 - -
Gso8g0444 926 MobiDBLite consensus disorder prediction 1 63 - -
Gso8g0444 926 MobiDBLite consensus disorder prediction 134 229 - -
Gso8g0444 926 SMART PINT_4 719 807 IPR000717 -
Gso8g0444 926 ProSiteProfiles PCI domain profile. 618 790 IPR000717 -
Gso8g0444 926 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 925 - -
Gso8g0444 926 Coils Coil 144 171 - -
Gso8g0444 926 MobiDBLite consensus disorder prediction 847 864 - -
Gso8g0444 926 MobiDBLite consensus disorder prediction 30 44 - -
Gso8g0444 926 Gene3D - 725 794 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0444 Gso-Chr8 4137675 4141648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0444 1 926 Eukaryotic Initiation Factors Gene Family AT3G56150 68.936 0.0 1205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0444 K03252 - gmx:100781967 1720.29