Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0441 ATGGACCCAACTTCGATCCCTCCCCCTCCGGCCACCACCGTCCCCTTCACTGTCGAACCCAGCAATCACGTGACCCCCGCCGACAACACCAACACCAACACCAACCACCCTCCTTACGATGAGATGATATACACAGCAATCGGGGCTCTGAAGGAGAAAGATGGTTCGAGCAAGCGAGCCATAGGAAAGTACATGGAACAAGTGTACAAGGACCTTCCACCCACCCACTCTGCTTTGTTGACTCACCATCTCAACCGATTGAAATCCGCTGGTCTTCTCATCCTCGTCAAAAAATCCTACAAGCTCCCCGGATCTGATCCTCTTCCCGTGCTCCAGGCCCAAAAGCCCCGCGGTCGCCCCCCAAAGCTCAAATCCCAGCCCAACACTGAGCTCACATGGCCTGCGCTAGCCCTCAACGACAACCCTGCTCTTCAATCCGCAAAAAGAGGCCCGGGTCGTCCCAAAAAGATTGCAGGACCCGTAGGTGTGAGCCCGGGCCCGATGGTGCCGGGCAGAAGGGGTCGTCCACCTGGGACCGGGAGATCTAAGCTGCCCAAGAGGCCTGGCCGTCCTCCCAAGCCCAAATCCGTGTCGGCGATCTCCAGTGGGCTCAAACGACGTCCGGGCCGCCCACCCAAAGCCGAATCCAACGTAAACGTCATCCCCTTCGCAGCCCCTGTTGCTCCCGGCCTGCCCACAGTGCAGCCCATCGTTCCTACTGCTTCCGTGCCCAATGGATCTCCCAGGCCCAGAGGAAGGCCCAAAAAGATTGTTGCCGGTGCGGGGGCTCCGGCGCTCTCTTCCGTTGGTGGTGCACCACGTGGCCGCGGACGGCCCCGTGGGGTCTTGCCGTTGGTGAGGCCGGGCCGCCCTCAGAAGCTCGCCGTTGGAAGGCCCAAGAATCCTGCAAGAAGGCCCGTGGGCCGCCCCAAGGGATCGACAGCTGCTGCAATCACAGCACATAAGGCTGCTAATGAAGATCTAAGAAGGAAGCTTGAACACTTCCAATCAAAAGTGAAGGAGTCTCTTGGCACGCTTAAGCCTTATTTTAACCATGAAAGTCCAGTCACTGCAATTGCGGCAATTCAAGAGTTGGAAGTACTGTCAACTTTGGACCTTAAAGCACCATTGAGGGATGAGACCCATCAACAGCCACAGCCACAGCCACAGGTGTATGAACAGCAATATCCCCAGCCACAGCCACTGCTGCAGCAATTTTTTCAACCACATACATCAGCCCCAAGCTAG 1248 0.5745 MDPTSIPPPPATTVPFTVEPSNHVTPADNTNTNTNHPPYDEMIYTAIGALKEKDGSSKRAIGKYMEQVYKDLPPTHSALLTHHLNRLKSAGLLILVKKSYKLPGSDPLPVLQAQKPRGRPPKLKSQPNTELTWPALALNDNPALQSAKRGPGRPKKIAGPVGVSPGPMVPGRRGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKAESNVNVIPFAAPVAPGLPTVQPIVPTASVPNGSPRPRGRPKKIVAGAGAPALSSVGGAPRGRGRPRGVLPLVRPGRPQKLAVGRPKNPARRPVGRPKGSTAAAITAHKAANEDLRRKLEHFQSKVKESLGTLKPYFNHESPVTAIAAIQELEVLSTLDLKAPLRDETHQQPQPQPQVYEQQYPQPQPLLQQFFQPHTSAPS* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0441 415 MobiDBLite consensus disorder prediction 1 15 - -
Gso8g0441 415 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso8g0441 415 MobiDBLite consensus disorder prediction 143 314 - -
Gso8g0441 415 SUPERFAMILY "Winged helix" DNA-binding domain 33 107 IPR036390 -
Gso8g0441 415 Coils Coil 318 338 - -
Gso8g0441 415 MobiDBLite consensus disorder prediction 104 128 - -
Gso8g0441 415 MobiDBLite consensus disorder prediction 381 415 - -
Gso8g0441 415 PRINTS AT-hook-like domain signature 114 124 IPR017956 GO:0003677
Gso8g0441 415 PRINTS AT-hook-like domain signature 146 157 IPR017956 GO:0003677
Gso8g0441 415 PRINTS AT-hook-like domain signature 246 256 IPR017956 GO:0003677
Gso8g0441 415 Gene3D - 31 109 IPR036388 -
Gso8g0441 415 Pfam linker histone H1 and H5 family 36 98 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso8g0441 415 PANTHER HISTONE H1 1 388 - -
Gso8g0441 415 MobiDBLite consensus disorder prediction 376 415 - -
Gso8g0441 415 MobiDBLite consensus disorder prediction 16 39 - -
Gso8g0441 415 CDD H15 36 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso8g0441 415 SMART h15plus2 33 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso8g0441 415 MobiDBLite consensus disorder prediction 1 39 - -
Gso8g0441 415 PANTHER HISTONE H1-LIKE 1 388 - -
Gso8g0441 415 SMART AT_hook_2 248 260 IPR017956 GO:0003677
Gso8g0441 415 SMART AT_hook_2 273 285 IPR017956 GO:0003677
Gso8g0441 415 SMART AT_hook_2 205 217 IPR017956 GO:0003677
Gso8g0441 415 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Gso8g0441 415 SMART AT_hook_2 148 160 IPR017956 GO:0003677
Gso8g0441 415 SMART AT_hook_2 170 182 IPR017956 GO:0003677
Gso8g0441 415 SMART AT_hook_2 304 316 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0441 Gso-Chr8 4112491 4115543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0441 40 108 Single Myb Histone (SMH) Gene Family AT1G49950 43.478 1.71e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0441 - - gmx:547676 691.419