Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0436 ATGGACGACGCCTCCTCCTCTCCCCCTCCTCCTCCTCCCCCTCCCGATCCCCCCTCCGCCGTCCCCCTCTCCCTCGTCCCCCTCCCCGCCCCACCCTCCTCCACTCGCCGCCTCCCCCCTCCCTGCTGGTCCCCCGATGAAACCCTCGCCCTCATCGACGCCTACCGCGACAAGTGGTACTCCCTCGGCCGCGGCAACCTCAAGGCCACCCACTGGCAGGAGGTCGCCGACGCTGTCTCTAGCCGCTGCCCCAACGCCTCCCCTCCCAAAACTCCTGTCCAGTGCCGCCACAAAATGGAGAAGCTGCGCAAGCGCTACCGCACCGAGATCCAACGCGCTCGCTCCCTCCCCGTTTCCCGATTCAACTCCTCCTGGGCCCACTTCAAGCTCATGGACTCCATGGAAAAAGGCCCCTCCCCTGTTAAACCCGATATCAACGATTCCGATCATAATAATACTGATAACGATGACGATGACGATGATGCTGGTCAAGATCTCTACCACCACCAGATCAACCACAACGGCCACACCAGAAGCTTGAACAAGCTCTATAGGAACGGCTTTCCAGGTTCCGGTGGTGGTGCCGGTGGGTTTAGGATTCGAATTCCCACTGGGTTGAGCGCGCCGCAGCAGCAGCATCCTGGATCTGCTTCCAAGGTGTTTGGGAAGGTTGGGAATCAGAGATTCAGCCCCAATTTGAATCAAAACCCTAACCCTAATCTTGGGAAGAAGAGGGAGAGAGACCCCGTGGGTGAAGTGGTGGCTGCGATTAAGGTATTGGGAGATGGGTTTGTGAGAATGGAACAGATGAAGATGGAGATGGCCAGGGAGATCGAGACCATGCGGATGGAGATGGAAATGAAGCGCACTGAGATGATTCTAGAATCGCAACAGCGGATTGTCGAGGCATTTGCCAAGGCCGTTTCGGAAAAGAACAGGAAGAAGAAGCCCAAGACTGTGCCATCAGCCTCTGGTTGA 978 0.5777 MDDASSSPPPPPPPPDPPSAVPLSLVPLPAPPSSTRRLPPPCWSPDETLALIDAYRDKWYSLGRGNLKATHWQEVADAVSSRCPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSSWAHFKLMDSMEKGPSPVKPDINDSDHNNTDNDDDDDDAGQDLYHHQINHNGHTRSLNKLYRNGFPGSGGGAGGFRIRIPTGLSAPQQQHPGSASKVFGKVGNQRFSPNLNQNPNPNLGKKRERDPVGEVVAAIKVLGDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKNRKKKPKTVPSASG* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0436 325 ProSiteProfiles Myb-like domain profile. 43 103 IPR001005 -
Gso8g0436 325 MobiDBLite consensus disorder prediction 1 41 - -
Gso8g0436 325 MobiDBLite consensus disorder prediction 133 167 - -
Gso8g0436 325 PANTHER TRANSCRIPTION FACTOR 1 322 - -
Gso8g0436 325 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 1 322 IPR044823 -
Gso8g0436 325 SMART 118neu2 50 139 IPR006578 -
Gso8g0436 325 Coils Coil 96 116 - -
Gso8g0436 325 Pfam Myb/SANT-like DNA-binding domain 41 134 IPR044822 -
Gso8g0436 325 SUPERFAMILY Formin homology 2 domain (FH2 domain) 8 77 - -
Gso8g0436 325 MobiDBLite consensus disorder prediction 1 39 - -
Gso8g0436 325 Gene3D - 43 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0436 Gso-Chr8 4061933 4063417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0436 42 139 Trihelix Transcription Factor Family AT1G54060 33.000 9.08e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso8g0436 Myb_DNA-bind_4 4.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0436 - - gmx:100794175 535.413